Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g084100.1.1 | Tomato | nucleus, plastid | 91.8 | 91.22 |
| PGSC0003DMT400004461 | Potato | plastid | 80.13 | 69.97 |
| PGSC0003DMT400045328 | Potato | plastid | 71.92 | 65.14 |
| CDY41587 | Canola | cytosol | 55.84 | 64.36 |
| CDX70325 | Canola | cytosol | 20.82 | 64.08 |
| VIT_08s0040g01940.t01 | Wine grape | cytosol | 72.56 | 63.54 |
| KRH32464 | Soybean | plastid | 65.93 | 59.89 |
| KRH19856 | Soybean | nucleus | 65.62 | 59.6 |
| GSMUA_Achr5P14690_001 | Banana | cytosol | 56.47 | 58.31 |
| Zm00001d015671_P001 | Maize | cytosol | 41.32 | 58.22 |
| GSMUA_Achr7P01960_001 | Banana | cytosol | 54.89 | 56.86 |
| GSMUA_Achr11P... | Banana | cytosol | 52.37 | 56.08 |
| KRH67682 | Soybean | nucleus | 59.94 | 55.72 |
| AT3G53410.1 | Thale cress | cytosol | 52.05 | 55.18 |
| KRG95976 | Soybean | plastid | 62.15 | 53.83 |
| AT3G09770.1 | Thale cress | plastid | 65.62 | 53.61 |
| CDY41312 | Canola | plastid | 62.78 | 53.49 |
| CDY22203 | Canola | mitochondrion, plastid | 62.78 | 53.49 |
| Bra034086.1-P | Field mustard | nucleus, plastid | 62.46 | 53.37 |
| CDY67386 | Canola | cytosol | 47.63 | 52.25 |
| Bra003133.1-P | Field mustard | nucleus | 47.63 | 52.25 |
| GSMUA_Achr2P12340_001 | Banana | nucleus | 65.62 | 52.13 |
| Bra029788.1-P | Field mustard | nucleus, plastid | 62.46 | 51.97 |
| CDY13299 | Canola | cytosol | 47.95 | 51.7 |
| KRH05126 | Soybean | cytosol | 15.77 | 51.55 |
| Bra009546.1-P | Field mustard | cytosol | 47.95 | 51.18 |
| CDY44729 | Canola | plastid | 62.46 | 50.9 |
| CDY10400 | Canola | cytosol | 47.32 | 50.34 |
| TraesCS4B01G220700.1 | Wheat | cytosol | 63.72 | 49.88 |
| TraesCS4D01G221000.1 | Wheat | cytosol | 63.72 | 49.88 |
| EER92535 | Sorghum | nucleus | 63.09 | 49.75 |
| Zm00001d028475_P002 | Maize | cytosol | 62.78 | 49.75 |
| TraesCS4A01G083500.1 | Wheat | cytosol | 63.41 | 49.63 |
| Bra028846.1-P | Field mustard | cytosol | 41.64 | 49.62 |
| CDY62899 | Canola | cytosol | 41.64 | 49.62 |
| CDY44348 | Canola | cytosol | 41.01 | 49.43 |
| Os10t0204100-01 | Rice | nucleus | 64.98 | 48.47 |
| TraesCS7B01G390000.1 | Wheat | mitochondrion | 41.96 | 48.19 |
| AT5G03200.1 | Thale cress | mitochondrion | 50.79 | 47.77 |
| TraesCS7D01G473200.1 | Wheat | cytosol | 43.53 | 45.54 |
| HORVU0Hr1G008700.4 | Barley | cytosol | 60.57 | 45.28 |
| CDX70324 | Canola | cytosol | 23.97 | 45.24 |
| TraesCS7A01G486700.1 | Wheat | cytosol | 43.22 | 45.21 |
| Os01t0374900-01 | Rice | plastid | 42.9 | 43.45 |
| HORVU7Hr1G109550.2 | Barley | cytosol | 43.22 | 41.64 |
| Os03t0254900-02 | Rice | cytosol, endoplasmic reticulum | 60.88 | 40.12 |
| PGSC0003DMT400073576 | Potato | plastid | 43.22 | 35.58 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400027153 | EnsemblPlantsGene:PGSC0003DMG400010474 | EntrezGene:102583568 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR22996 | PANTHER:PTHR22996:SF4 | PFAM:PF13920 | PFscan:PS50089 |
| PGSC:PGSC0003DMG400010474 | RefSeq:XP_015165097.1 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI000295F6B3 |
| UniProt:M1APA1 | MapMan:35.1 | : | : | : | : |
Description
Zinc finger family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400010474]
Coordinates
chr10:+:54983213..54991508
Molecular Weight (calculated)
35191.8 Da
IEP (calculated)
5.990
GRAVY (calculated)
-0.523
Length
317 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNGGSRGVN GRRRSNSRRS HPPPPPPPQP EIRANGYVFA ATPYLSRFPH GPSYYQHPGY YTTPPPPRPP AMAVPYVEHE KAVTIRNDVN LKKETLRIEP
101: DEKNPGKYLV AFTFDATVSG SLTAIFFGKE GEDCLLTPMK ESLLPPITVE FQQGLSQKFR QPSGTGIDLS MFDEAESSKD ADADVYPLAV KVEAIPVRES
201: VSEDENAASG STNSQLTLAV FEKDKGEYHV KVVKQILWVN GMRYELQEIY GIGDSIDNDY DGNDPGKECV ICLSEPRDTT VLPCRHMCMC SGCAKILRIQ
301: TNRCPICRQP VERLLEI
101: DEKNPGKYLV AFTFDATVSG SLTAIFFGKE GEDCLLTPMK ESLLPPITVE FQQGLSQKFR QPSGTGIDLS MFDEAESSKD ADADVYPLAV KVEAIPVRES
201: VSEDENAASG STNSQLTLAV FEKDKGEYHV KVVKQILWVN GMRYELQEIY GIGDSIDNDY DGNDPGKECV ICLSEPRDTT VLPCRHMCMC SGCAKILRIQ
301: TNRCPICRQP VERLLEI
001: MGNISSSGGE GRRRRRRNHT AAPPPPPPPP SSSLPPPPLP TEIQANPIVF AAVTPYPNPN PNPVYQYPAS YYHHPPPGAM PLPPYDHHLQ HHPPHPYHNH
101: SWAPVAMARY PYAGHMMAQP TPYVEHQKAV TIRNDVNLKK ESLRLEPDPD NPGRFLVSFT FDATVSGRIS VIFFAKESED CKLTATKEDI LPPITLDFEK
201: GLGQKFKQSS GSGIDFSVFE DVELFKAAAD TEIYPLAVKA EAAPSGGENE EEERSGSKNA QITQAVYEKD KGEIKIRVVK QILWVNGTRY ELQEIYGIGN
301: TVEGDDDSAD DANDPGKECV ICLSEPRDTT VLPCRHMCMC SGCAKVLRFQ TNRCPICRQP VERLLEIKVH GNNGSGNNTG QGETVEQE
101: SWAPVAMARY PYAGHMMAQP TPYVEHQKAV TIRNDVNLKK ESLRLEPDPD NPGRFLVSFT FDATVSGRIS VIFFAKESED CKLTATKEDI LPPITLDFEK
201: GLGQKFKQSS GSGIDFSVFE DVELFKAAAD TEIYPLAVKA EAAPSGGENE EEERSGSKNA QITQAVYEKD KGEIKIRVVK QILWVNGTRY ELQEIYGIGN
301: TVEGDDDSAD DANDPGKECV ICLSEPRDTT VLPCRHMCMC SGCAKVLRFQ TNRCPICRQP VERLLEIKVH GNNGSGNNTG QGETVEQE
Arabidopsis Description
LOG2Probable E3 ubiquitin-protein ligase LOG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9S752]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.