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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • plastid 1
  • mitochondrion 2
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus, peroxisome, plastid
BaCelLo:nucleus
EpiLoc:plastid
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:peroxisome
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
EER88756
EER90144
EES06373
EES13610
EES13936
KXG27287

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G09770.1 EER88756 AT2G24762.1 22291198
AT3G09770.1 EER90144 AT2G24762.1 22291198
AT3G09770.1 EES06373 AT2G24762.1 22291198
AT3G09770.1 EES13610 AT2G24762.1 22291198
AT3G09770.1 EES13936 AT2G24762.1 22291198
AT3G09770.1 EER88756 AT4G25760.1 22291198
AT3G09770.1 EER90144 AT4G25760.1 22291198
AT3G09770.1 EES06373 AT4G25760.1 22291198
AT3G09770.1 EES13610 AT4G25760.1 22291198
AT3G09770.1 EES13936 AT4G25760.1 22291198
AT3G09770.1 EER88756 AT4G31730.1 22291198
AT3G09770.1 EER90144 AT4G31730.1 22291198
AT3G09770.1 EES06373 AT4G31730.1 22291198
AT3G09770.1 EES13610 AT4G31730.1 22291198
AT3G09770.1 EES13936 AT4G31730.1 22291198
AT3G09770.1 EER88756 AT4G31730.1 24036454
AT3G09770.1 EER90144 AT4G31730.1 24036454
AT3G09770.1 EES06373 AT4G31730.1 24036454
AT3G09770.1 EES13610 AT4G31730.1 24036454
AT3G09770.1 EES13936 AT4G31730.1 24036454
AT3G53410.1 KXG27287 AT1G22920.1 21798944
AT3G53410.1 EER88756 AT4G25760.1 22291198
AT3G53410.1 EER90144 AT4G25760.1 22291198
AT3G53410.1 EES06373 AT4G25760.1 22291198
AT3G53410.1 EES13610 AT4G25760.1 22291198
AT3G53410.1 EES13936 AT4G25760.1 22291198
AT3G53410.1 EER88756 AT5G57685.1 22291198
AT3G53410.1 EER90144 AT5G57685.1 22291198
AT3G53410.1 EES06373 AT5G57685.1 22291198
AT3G53410.1 EES13610 AT5G57685.1 22291198
AT3G53410.1 EES13936 AT5G57685.1 22291198
AT5G03200.1 EER88756 AT4G31730.1 22291198
AT5G03200.1 EER90144 AT4G31730.1 22291198
AT5G03200.1 EES06373 AT4G31730.1 22291198
AT5G03200.1 EES13610 AT4G31730.1 22291198
AT5G03200.1 EES13936 AT4G31730.1 22291198
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d015671_P001 Maize cytosol 52.24 93.33
Zm00001d028475_P002 Maize cytosol 92.54 93.0
TraesCS4D01G221000.1 Wheat cytosol 83.83 83.21
TraesCS4B01G220700.1 Wheat cytosol 83.83 83.21
TraesCS4A01G083500.1 Wheat cytosol 83.33 82.72
HORVU0Hr1G008700.4 Barley cytosol 79.35 75.24
GSMUA_Achr5P14690_001 Banana cytosol 53.73 70.36
VIT_08s0040g01940.t01 Wine grape cytosol 61.94 68.78
GSMUA_Achr11P... Banana cytosol 50.25 68.24
PGSC0003DMT400004461 Potato plastid 60.7 67.22
Solyc09g007700.2.1 Tomato plastid 60.45 67.13
GSMUA_Achr7P01960_001 Banana cytosol 50.75 66.67
CDY41587 Canola cytosol 44.78 65.45
KRH32464 Soybean plastid 56.47 65.04
GSMUA_Achr2P12340_001 Banana nucleus 63.93 64.41
KRH19856 Soybean nucleus 55.72 64.18
CDX70325 Canola cytosol 16.42 64.08
Os03t0254900-02 Rice cytosol, endoplasmic reticulum 76.12 63.62
Solyc10g084100.1.1 Tomato nucleus, plastid 50.25 63.32
PGSC0003DMT400027153 Potato nucleus, plastid 49.75 63.09
VIT_06s0004g02970.t01 Wine grape mitochondrion 54.73 63.04
Solyc10g086080.1.1 Tomato nucleus 50.99 61.19
Bra029788.1-P Field mustard nucleus, plastid 56.97 60.1
PGSC0003DMT400045328 Potato plastid 51.74 59.43
CDY44729 Canola plastid 57.46 59.38
AT3G09770.1 Thale cress plastid 56.47 58.51
Bra034086.1-P Field mustard nucleus, plastid 53.73 58.22
AT3G53410.1 Thale cress cytosol 43.28 58.19
CDY41312 Canola plastid 53.73 58.06
CDY22203 Canola mitochondrion, plastid 53.48 57.8
KRG95976 Soybean plastid 52.49 57.65
KRH67682 Soybean nucleus 48.51 57.18
Bra003133.1-P Field mustard nucleus 40.8 56.75
CDY67386 Canola cytosol 40.8 56.75
KRH05126 Soybean cytosol 13.43 55.67
CDY13299 Canola cytosol 40.3 55.1
KRH22903 Soybean mitochondrion, nucleus 41.54 54.05
CDY10400 Canola cytosol 38.56 52.01
Bra009546.1-P Field mustard cytosol 38.31 51.85
CDY44348 Canola cytosol 33.83 51.71
AT5G03200.1 Thale cress mitochondrion 42.54 50.74
CDY62899 Canola cytosol 33.08 50.0
Bra028846.1-P Field mustard cytosol 33.08 50.0
CDX70324 Canola cytosol 20.9 50.0
EES19487 Sorghum nucleus 38.06 45.0
Solyc04g054680.1.1 Tomato cytosol 31.09 34.92
Solyc04g054650.1.1 Tomato cytosol 33.58 27.78
Protein Annotations
EnsemblPlants:EER92535EnsemblPlantsGene:SORBI_3001G433400EntrezGene:8078837Gene3D:3.30.40.10InterPro:IPR001841InterPro:IPR013083
InterPro:Znf_RINGInterPro:Znf_RING/FYVE/PHDPANTHER:PTHR22996PANTHER:PTHR22996:SF4PFAM:PF13920PFscan:PS50089
ProteinID:EER92535ProteinID:EER92535.1RefSeq:XP_002465537.1SEG:segSMART:SM00184SUPFAM:SSF57850
unigene:Sbi.11705UniParc:UPI0001A826B3UniProt:C5WQU9MapMan:35.1::
Description
hypothetical protein
Coordinates
chr1:+:71192804..71196449
Molecular Weight (calculated)
44570.4 Da
IEP (calculated)
6.260
GRAVY (calculated)
-0.724
Length
402 amino acids
Sequence
(BLAST)
001: MGNAGSNGGG AAAGHRRRSS SHGHGHHHQA PPPPQPQETA PNRYVFAAAT PYPPQYPNPN PPQYYPQYGN YYPPPPPSVP VPLPAPYDHH HRPPTAAPGE
101: FPPPPPAHPH HYPGWAGRYP SYGPHLPMPT PYVEHQKAVT IRNDVNLKKE TLRIEPDEEC PGHFLVAFTF DATVAGSMTV YFFAKEELNC NLAAMKEDLI
201: KPVTVSFKEG LGQKFRQPSG TGIDFSVFEE SDLLKQGDMD VYPLVVKAET ALSADHPSEG DDQKMKTPNS QITQAVFEKK ENGDYQVRVV CQILWVNGTR
301: YELQEIYGIG NSMEGDADAN DPGKECVICL SEPRDTTVLP CRHMCMCSEC AKVLRYQTTR CPICRQPVER LLEIKVNNKS EEQQQTPQSP PLPAPAPQQE
401: EV
Best Arabidopsis Sequence Match ( AT3G09770.1 )
(BLAST)
001: MGNISSSGGE GRRRRRRNHT AAPPPPPPPP SSSLPPPPLP TEIQANPIVF AAVTPYPNPN PNPVYQYPAS YYHHPPPGAM PLPPYDHHLQ HHPPHPYHNH
101: SWAPVAMARY PYAGHMMAQP TPYVEHQKAV TIRNDVNLKK ESLRLEPDPD NPGRFLVSFT FDATVSGRIS VIFFAKESED CKLTATKEDI LPPITLDFEK
201: GLGQKFKQSS GSGIDFSVFE DVELFKAAAD TEIYPLAVKA EAAPSGGENE EEERSGSKNA QITQAVYEKD KGEIKIRVVK QILWVNGTRY ELQEIYGIGN
301: TVEGDDDSAD DANDPGKECV ICLSEPRDTT VLPCRHMCMC SGCAKVLRFQ TNRCPICRQP VERLLEIKVH GNNGSGNNTG QGETVEQE
Arabidopsis Description
LOG2Probable E3 ubiquitin-protein ligase LOG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9S752]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.