Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G03200.1 | CDX68780 | AT4G31730.1 | 22291198 |
| AT5G03200.1 | CDX80475 | AT5G24920.1 | 22291198 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY13950 | Canola | cytosol | 44.66 | 46.46 |
| Bra009546.1-P | Field mustard | cytosol | 98.06 | 34.01 |
| CDY10400 | Canola | cytosol | 94.17 | 32.55 |
| Zm00001d015671_P001 | Maize | cytosol | 64.08 | 29.33 |
| CDY13958 | Canola | cytosol | 51.46 | 27.6 |
| CDY41587 | Canola | cytosol | 66.99 | 25.09 |
| CDY44348 | Canola | cytosol | 63.11 | 24.71 |
| CDY62899 | Canola | cytosol | 62.14 | 24.06 |
| CDY67386 | Canola | cytosol | 63.11 | 22.49 |
| CDY13299 | Canola | cytosol | 63.11 | 22.11 |
| GSMUA_Achr11P... | Banana | cytosol | 63.11 | 21.96 |
| GSMUA_Achr5P14690_001 | Banana | cytosol | 65.05 | 21.82 |
| GSMUA_Achr7P01960_001 | Banana | cytosol | 63.11 | 21.24 |
| PGSC0003DMT400027153 | Potato | nucleus, plastid | 64.08 | 20.82 |
| TraesCS7B01G390000.1 | Wheat | mitochondrion | 55.34 | 20.65 |
| AT5G03200.1 | Thale cress | mitochondrion | 66.99 | 20.47 |
| Solyc10g084100.1.1 | Tomato | nucleus, plastid | 63.11 | 20.38 |
| KRH19856 | Soybean | nucleus | 68.93 | 20.34 |
| KRH32464 | Soybean | plastid | 68.93 | 20.34 |
| Solyc10g086080.1.1 | Tomato | nucleus | 65.05 | 20.0 |
| PGSC0003DMT400045328 | Potato | plastid | 65.05 | 19.14 |
| CDY41312 | Canola | plastid | 67.96 | 18.82 |
| TraesCS7A01G486700.1 | Wheat | cytosol | 55.34 | 18.81 |
| TraesCS7D01G473200.1 | Wheat | cytosol | 55.34 | 18.81 |
| CDY22203 | Canola | mitochondrion, plastid | 66.99 | 18.55 |
| CDY44729 | Canola | plastid | 69.9 | 18.51 |
| PGSC0003DMT400004461 | Potato | plastid | 65.05 | 18.46 |
| KRG95976 | Soybean | plastid | 65.05 | 18.31 |
| VIT_08s0040g01940.t01 | Wine grape | cytosol | 64.08 | 18.23 |
| KRH67682 | Soybean | nucleus | 60.19 | 18.18 |
| Solyc09g007700.2.1 | Tomato | plastid | 63.11 | 17.96 |
| Os01t0374900-01 | Rice | plastid | 53.4 | 17.57 |
| Solyc04g054680.1.1 | Tomato | cytosol | 60.19 | 17.32 |
| GSMUA_Achr2P12340_001 | Banana | nucleus | 66.99 | 17.29 |
| HORVU7Hr1G109550.2 | Barley | cytosol | 54.37 | 17.02 |
| Zm00001d028475_P002 | Maize | cytosol | 64.08 | 16.5 |
| EER92535 | Sorghum | nucleus | 64.08 | 16.42 |
| TraesCS4A01G083500.1 | Wheat | cytosol | 64.08 | 16.3 |
| TraesCS4B01G220700.1 | Wheat | cytosol | 64.08 | 16.3 |
| TraesCS4D01G221000.1 | Wheat | cytosol | 64.08 | 16.3 |
| Os10t0204100-01 | Rice | nucleus | 64.08 | 15.53 |
| HORVU0Hr1G008700.4 | Barley | cytosol | 63.11 | 15.33 |
| CDX92559 | Canola | mitochondrion | 52.43 | 14.52 |
| CDY24715 | Canola | mitochondrion | 49.51 | 14.05 |
| CDY13949 | Canola | mitochondrion | 52.43 | 13.99 |
| CDY05235 | Canola | mitochondrion | 48.54 | 13.7 |
| Os03t0254900-02 | Rice | cytosol, endoplasmic reticulum | 63.11 | 13.51 |
| Solyc04g054650.1.1 | Tomato | cytosol | 60.19 | 12.76 |
| KRH05126 | Soybean | cytosol | 5.83 | 6.19 |
| CDX70324 | Canola | cytosol | 0.97 | 0.6 |
Protein Annotations
| EnsemblPlants:CDX70325 | EnsemblPlantsGene:GSBRNA2T00136481001 | Gene3D:3.30.40.10 | GO:A0A078C012 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR22996 | PANTHER:PTHR22996:SF0 | PFAM:PF13920 | PFscan:PS50089 |
| ProteinID:CDX70325 | ProteinID:CDX70325.1 | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0004EE02F2 | MapMan:35.1 |
Description
BnaA10g26740D
Coordinates
chrLK031790:+:4135580..4135968
Molecular Weight (calculated)
11864.7 Da
IEP (calculated)
6.983
GRAVY (calculated)
-0.107
Length
103 amino acids
Sequence
(BLAST)
(BLAST)
001: MQITQVTYVK EEDEIKPSVI KQFISVNGTR YELQDIYGIG DAVDENARKE CVICLSEPRD VLVLPCRHMC MCVGCAKELR FQTNLCPVCR QPVERLLKIP
101: LKY
101: LKY
001: MGNISSSGGE GRRRRRRNHT AAPPPPPPPP SSSLPPPPLP TEIQANPIVF AAVTPYPNPN PNPVYQYPAS YYHHPPPGAM PLPPYDHHLQ HHPPHPYHNH
101: SWAPVAMARY PYAGHMMAQP TPYVEHQKAV TIRNDVNLKK ESLRLEPDPD NPGRFLVSFT FDATVSGRIS VIFFAKESED CKLTATKEDI LPPITLDFEK
201: GLGQKFKQSS GSGIDFSVFE DVELFKAAAD TEIYPLAVKA EAAPSGGENE EEERSGSKNA QITQAVYEKD KGEIKIRVVK QILWVNGTRY ELQEIYGIGN
301: TVEGDDDSAD DANDPGKECV ICLSEPRDTT VLPCRHMCMC SGCAKVLRFQ TNRCPICRQP VERLLEIKVH GNNGSGNNTG QGETVEQE
101: SWAPVAMARY PYAGHMMAQP TPYVEHQKAV TIRNDVNLKK ESLRLEPDPD NPGRFLVSFT FDATVSGRIS VIFFAKESED CKLTATKEDI LPPITLDFEK
201: GLGQKFKQSS GSGIDFSVFE DVELFKAAAD TEIYPLAVKA EAAPSGGENE EEERSGSKNA QITQAVYEKD KGEIKIRVVK QILWVNGTRY ELQEIYGIGN
301: TVEGDDDSAD DANDPGKECV ICLSEPRDTT VLPCRHMCMC SGCAKVLRFQ TNRCPICRQP VERLLEIKVH GNNGSGNNTG QGETVEQE
Arabidopsis Description
LOG2Probable E3 ubiquitin-protein ligase LOG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9S752]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.