CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24715	Canola	mitochondrion	91.23	91.74
AT3G06140.1	Thale cress	mitochondrion	76.99	78.27
CDY13950	Canola	cytosol	18.36	67.68
CDY13958	Canola	cytosol	35.07	66.67
CDX92559	Canola	mitochondrion	61.64	60.48
CDY13949	Canola	mitochondrion	60.82	57.51
HORVU1Hr1G062460.2	Barley	cytosol, nucleus	30.41	53.88
TraesCS1B01G258900.1	Wheat	cytosol	33.42	53.51
KRH51029	Soybean	mitochondrion	49.04	53.27
Solyc01g080080.2.1	Tomato	nucleus	22.47	52.56
GSMUA_Achr3P09070_001	Banana	cytosol	38.08	50.55
KRH20904	Soybean	mitochondrion	51.23	50.4
KRH11381	Soybean	mitochondrion	50.68	49.6
VIT_05s0020g02680.t01	Wine grape	mitochondrion	52.6	48.98
KRH02118	Soybean	cytosol, mitochondrion	36.99	48.91
CDX70325	Canola	cytosol	13.7	48.54
EES19487	Sorghum	nucleus	44.93	48.24
PGSC0003DMT400073576	Potato	plastid	49.32	46.75
Os05t0397650-00	Rice	nucleus	43.56	44.79
Zm00001d038127_P001	Maize	nucleus	41.1	44.64
CDY41587	Canola	cytosol	33.42	44.36
CDY67386	Canola	cytosol	34.79	43.94
CDY13299	Canola	cytosol	33.7	41.84
CDY44348	Canola	cytosol	28.77	39.92
CDY10400	Canola	cytosol	32.05	39.26
CDY44729	Canola	plastid	40.27	37.79
CDY41312	Canola	plastid	38.36	37.63
CDY22203	Canola	mitochondrion, plastid	38.36	37.63
CDX70324	Canola	cytosol	17.26	37.5
CDY62899	Canola	cytosol	27.12	37.22

Protein Annotations

EnsemblPlants:CDY05235	EnsemblPlantsGene:GSBRNA2T00120050001	Gene3D:3.30.40.10	GO:A0A078ETB4	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22996	PANTHER:PTHR22996:SF4	PFAM:PF13920	PFscan:PS50089
ProteinID:CDY05235	ProteinID:CDY05235.1	SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0004EEC3EC
MapMan:35.1	:	:	:	:	:

Description

BnaC05g45680D

Coordinates

chrLK031960:-:487486..489101

Molecular Weight (calculated)

41697.2 Da

IEP (calculated)

6.647

GRAVY (calculated)

-0.631

Length

365 amino acids

Sequence
(BLAST)

001: MGISFSTNRR RQNNRRHLLH HHPPPPYYYL DPPPPPQPQP FPPHYDYNYS TYHIPPPLPP PPQINSCSYG HPYHYYPQHP QYLTTAQPNW WGPTMRPGFV
101: CPPQPQTQMQ PLPPPYVENQ NAKKVRNDVN VHRDTVRLEV DDLVPGHHLV SFVFDAIFHG SFTITFFAKE EPNCTFIPQF PEVYPPTRFS FQKGPGQKFL
201: QPSGTGSDLS FFALDDLSKP LEEDVYPLVI SAETLISQNQ MSEQSSVHKQ VTQAVLEKDR DGSFRVKVVK QILWIEGVRY ELRELYGSSN QGASSGLEDS
301: GSGKECVICM TEAKDTAVLP CRHLCMCSDC AKELRLQSNK CPICRHPIEE LLEINVNSSD EQHFT

Best Arabidopsis Sequence Match ( AT3G06140.1 )
(BLAST)

001: MGISFSNNNR RRDNNNRRHL HHYPPPPPYY YLDPPPPPPP FPPHYDYNYS NYHLSPPLPP QPQINSCSYG HYHYHPQPPQ YFTTAQPNWW GPMMRPAYYC
101: PPQPQTQPPK PYLEQQNAKK VRNDVNVHRD TVRLEVDDLV PGHHLVSFVF DALFDGSFTI TFFAKEEPNC TIIPQFPEVY SPTRFHFQKG PGQKFLQPSG
201: TGTDLSFFVL DDLSKPLEED VYPLVISAET IISPNSISEQ SSVHKQVTQA VLEKDNDGSF KVKVVKQILW IEGVRYELRE LYGSTTQGAA SGLDESGSGT
301: ECVICMTEAK DTAVLPCRHL CMCSDCAKEL RLQSNKCPIC RQPIEELLEI KMNSSDEQH

Arabidopsis Description

LUL4Probable E3 ubiquitin-protein ligase LUL4 [Source:UniProtKB/Swiss-Prot;Acc:Q8LA32]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.