CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX85335
CDX86307
CDX92732
CDX94417
CDY00062
CDY00066
CDY05684
CDY48750
CDY68098
CDY72356

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G19080.1	CDX92732	AT4G25760.1	22291198
AT5G19080.1	CDX94417	AT4G25760.1	22291198
AT5G19080.1	CDY68098	AT4G25760.1	22291198
AT5G19080.1	CDY72356	AT4G25760.1	22291198
AT5G19080.1	CDX85335	AT5G48385.1	21798944
AT5G19080.1	CDX86307	AT5G48385.1	21798944
AT5G19080.1	CDY00062	AT5G48385.1	21798944
AT5G19080.1	CDY00066	AT5G48385.1	21798944
AT5G19080.1	CDY05684	AT5G48385.1	21798944
AT5G19080.1	CDY48750	AT5G48385.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13958	Canola	cytosol	97.98	50.52
CDX70325	Canola	cytosol	46.46	44.66
Solyc01g080080.2.1	Tomato	nucleus	55.56	35.26
HORVU1Hr1G062460.2	Barley	cytosol, nucleus	62.63	30.1
TraesCS1B01G258900.1	Wheat	cytosol	63.64	27.63
CDX92559	Canola	mitochondrion	97.98	26.08
CDY13949	Canola	mitochondrion	100.0	25.65
CDY41587	Canola	cytosol	56.57	20.36
AT5G19080.1	Thale cress	cytosol	75.76	19.84
EES19487	Sorghum	nucleus	66.67	19.41
Zm00001d038127_P001	Maize	nucleus	65.66	19.35
CDY05235	Canola	mitochondrion	67.68	18.36
CDY67386	Canola	cytosol	53.54	18.34
CDY24715	Canola	mitochondrion	66.67	18.18
GSMUA_Achr3P09070_001	Banana	cytosol	50.51	18.18
KRH51029	Soybean	mitochondrion	60.61	17.86
CDY13299	Canola	cytosol	52.53	17.69
CDY44348	Canola	cytosol	45.45	17.11
KRH02118	Soybean	cytosol, mitochondrion	47.47	17.03
CDY62899	Canola	cytosol	45.45	16.92
KRH11381	Soybean	mitochondrion	62.63	16.62
PGSC0003DMT400073576	Potato	plastid	63.64	16.36
Os05t0397650-00	Rice	nucleus	58.59	16.34
KRH20904	Soybean	mitochondrion	59.6	15.9
CDY10400	Canola	cytosol	45.45	15.1
CDY41312	Canola	plastid	56.57	15.05
CDY22203	Canola	mitochondrion, plastid	56.57	15.05
VIT_05s0020g02680.t01	Wine grape	mitochondrion	57.58	14.54
CDY44729	Canola	plastid	56.57	14.4
CDX70324	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDY13950	EnsemblPlantsGene:GSBRNA2T00078445001	Gene3D:3.30.40.10	GO:A0A078FHN3	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22996	PANTHER:PTHR22996:SF4	PFAM:PF13920	PFscan:PS50089
ProteinID:CDY13950	ProteinID:CDY13950.1	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0004EE7B88	UniProt:A0A078FHN3
MapMan:35.1	:	:	:	:	:

Description

BnaC09g38760DBnaC09g38760D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FHN3]

Coordinates

chrLK032039:+:394761..395450

Molecular Weight (calculated)

11270.4 Da

IEP (calculated)

4.360

GRAVY (calculated)

-0.443

Length

99 amino acids

Sequence
(BLAST)

1: MKQILWIEGA RYELRELYGI DNSTAQDDDV ASGLEDSGDK ECVICLTEPK DTAVMPCRHL CLCSDCAKEL RFQSNKCPIC RQPFDELLMI KVESSNEQH

Best Arabidopsis Sequence Match ( AT5G19080.1 )
(BLAST)

001: MGISLSKRRR DNNNNHHHPH HNPPYYYSDP PPQQPPPQNG YSYSHNYPVS TPQLSLPPPP AQPPSSSQPP PSQISYRPYG QNYHQNQYYP QQAPPYFTGY
101: HHNGFNPMMR PVYFGPTPVA VMEPPAPYVE HQTAKKVKND VNVNKATVRL VADDLNPGHY LVSFVFDALF DGSFTIIFFG EEESKCTIVP HLPEAFPPIK
201: VPFQKGAGQK FLQAPGTGID LGFFSLDDLS KPSPEEVYPL VISAETVISP SSVSEEPLVH KQITQAVLEK TNDGSFKVKV MKQILWIEGE RYELQELYGI
301: DNSITQGTAA SGLEDTGGKE CVICLTEPKD TAVMPCRHLC LCSDCAEELR FQTNKCPICR QPIHELVKIK VESSDEQH

Arabidopsis Description

LUL3Probable E3 ubiquitin-protein ligase LUL3 [Source:UniProtKB/Swiss-Prot;Acc:Q84ME1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.