Factsheet for AT5G19080.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13958	Canola	cytosol	39.42	77.6
CDY13950	Canola	cytosol	19.84	75.76
CDX92559	Canola	mitochondrion	66.93	68.01
CDY13949	Canola	mitochondrion	69.05	67.62
Bra002208.1-P	Field mustard	mitochondrion, nucleus	65.87	66.58
AT3G06140.1	Thale cress	mitochondrion	58.73	61.84
HORVU1Hr1G062460.2	Barley	cytosol, nucleus	29.89	54.85
TraesCS1B01G258900.1	Wheat	cytosol	33.07	54.82
KRH51029	Soybean	mitochondrion	44.71	50.3
EES19487	Sorghum	nucleus	43.92	48.82
KRH11381	Soybean	mitochondrion	48.15	48.79
KRH20904	Soybean	mitochondrion	47.88	48.79
GSMUA_Achr3P09070_001	Banana	cytosol	35.19	48.36
Zm00001d038127_P001	Maize	nucleus	42.33	47.62
Solyc01g080080.2.1	Tomato	nucleus	19.58	47.44
KRH02118	Soybean	cytosol, mitochondrion	34.13	46.74
Os05t0397650-00	Rice	nucleus	43.39	46.2
VIT_05s0020g02680.t01	Wine grape	mitochondrion	47.35	45.66
PGSC0003DMT400073576	Potato	plastid	44.97	44.16
AT3G53410.1	Thale cress	cytosol	34.13	43.14
AT3G09770.1	Thale cress	plastid	38.89	37.89
AT5G03200.1	Thale cress	mitochondrion	31.48	35.31

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	EntrezGene:832027	EMBL:AC068809	ProteinID:AED92649.1	ArrayExpress:AT5G19080
EnsemblPlantsGene:AT5G19080	RefSeq:AT5G19080	TAIR:AT5G19080	RefSeq:AT5G19080-TAIR-G	EnsemblPlants:AT5G19080.1	TAIR:AT5G19080.1
EMBL:AY125510	EMBL:BT006357	InterPro:E3ligase_BOI_like	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	GO:GO:0046872	InterPro:IPR001841	InterPro:IPR013083	RefSeq:NP_197409.1
PFAM:PF13920	PIRSF:PIRSF036836	PO:PO:0000293	PFscan:PS50089	PANTHER:PTHR22996	PANTHER:PTHR22996:SF4
UniProt:Q84ME1	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI00001624F1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

LUL3Probable E3 ubiquitin-protein ligase LUL3 [Source:UniProtKB/Swiss-Prot;Acc:Q84ME1]

Coordinates

chr5:+:6378149..6380605

Molecular Weight (calculated)

42310.9 Da

IEP (calculated)

6.296

GRAVY (calculated)

-0.568

Length

378 amino acids

Sequence
(BLAST)

001: MGISLSKRRR DNNNNHHHPH HNPPYYYSDP PPQQPPPQNG YSYSHNYPVS TPQLSLPPPP AQPPSSSQPP PSQISYRPYG QNYHQNQYYP QQAPPYFTGY
101: HHNGFNPMMR PVYFGPTPVA VMEPPAPYVE HQTAKKVKND VNVNKATVRL VADDLNPGHY LVSFVFDALF DGSFTIIFFG EEESKCTIVP HLPEAFPPIK
201: VPFQKGAGQK FLQAPGTGID LGFFSLDDLS KPSPEEVYPL VISAETVISP SSVSEEPLVH KQITQAVLEK TNDGSFKVKV MKQILWIEGE RYELQELYGI
301: DNSITQGTAA SGLEDTGGKE CVICLTEPKD TAVMPCRHLC LCSDCAEELR FQTNKCPICR QPIHELVKIK VESSDEQH

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.