Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 3
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY41587 | Canola | cytosol | 59.54 | 84.0 |
| Bra029788.1-P | Field mustard | nucleus, plastid | 72.94 | 74.28 |
| CDY44729 | Canola | plastid | 73.97 | 73.78 |
| Bra034086.1-P | Field mustard | nucleus, plastid | 69.07 | 72.24 |
| CDY22203 | Canola | mitochondrion, plastid | 68.81 | 71.77 |
| CDY41312 | Canola | plastid | 68.56 | 71.51 |
| PGSC0003DMT400004461 | Potato | plastid | 61.86 | 66.12 |
| Solyc09g007700.2.1 | Tomato | plastid | 61.34 | 65.75 |
| PGSC0003DMT400027153 | Potato | nucleus, plastid | 53.61 | 65.62 |
| Solyc10g084100.1.1 | Tomato | nucleus, plastid | 53.61 | 65.2 |
| Solyc10g086080.1.1 | Tomato | nucleus | 54.38 | 62.99 |
| VIT_08s0040g01940.t01 | Wine grape | cytosol | 58.76 | 62.98 |
| KRH32464 | Soybean | plastid | 56.44 | 62.75 |
| Zm00001d015671_P001 | Maize | cytosol | 35.82 | 61.78 |
| KRH19856 | Soybean | nucleus | 55.41 | 61.6 |
| GSMUA_Achr5P14690_001 | Banana | cytosol | 48.71 | 61.56 |
| PGSC0003DMT400045328 | Potato | plastid | 55.15 | 61.14 |
| AT3G53410.1 | Thale cress | cytosol | 46.39 | 60.2 |
| GSMUA_Achr7P01960_001 | Banana | cytosol | 46.91 | 59.48 |
| GSMUA_Achr11P... | Banana | cytosol | 45.1 | 59.12 |
| KRH67682 | Soybean | nucleus | 50.52 | 57.48 |
| AT5G03200.1 | Thale cress | mitochondrion | 49.74 | 57.27 |
| KRG95976 | Soybean | plastid | 53.87 | 57.1 |
| TraesCS4D01G221000.1 | Wheat | cytosol | 59.28 | 56.79 |
| EER92535 | Sorghum | nucleus | 58.51 | 56.47 |
| TraesCS4B01G220700.1 | Wheat | cytosol | 58.51 | 56.05 |
| Zm00001d028475_P002 | Maize | cytosol | 57.73 | 56.0 |
| TraesCS4A01G083500.1 | Wheat | cytosol | 58.25 | 55.8 |
| GSMUA_Achr2P12340_001 | Banana | nucleus | 57.22 | 55.64 |
| Os10t0204100-01 | Rice | nucleus | 57.47 | 52.47 |
| HORVU0Hr1G008700.4 | Barley | cytosol | 56.7 | 51.89 |
| KRH05126 | Soybean | cytosol | 12.11 | 48.45 |
| TraesCS7B01G390000.1 | Wheat | mitochondrion | 34.28 | 48.19 |
| TraesCS7D01G473200.1 | Wheat | cytosol | 35.82 | 45.87 |
| TraesCS7A01G486700.1 | Wheat | cytosol | 35.31 | 45.21 |
| Os03t0254900-02 | Rice | cytosol, endoplasmic reticulum | 55.67 | 44.91 |
| Os01t0374900-01 | Rice | plastid | 36.08 | 44.73 |
| HORVU7Hr1G109550.2 | Barley | cytosol | 34.79 | 41.03 |
| AT3G06140.1 | Thale cress | mitochondrion | 36.34 | 39.28 |
| AT5G19080.1 | Thale cress | cytosol | 37.89 | 38.89 |
| Solyc04g054680.1.1 | Tomato | cytosol | 33.76 | 36.59 |
| Solyc04g054650.1.1 | Tomato | cytosol | 36.08 | 28.81 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | EntrezGene:820135 | UniProt:A0A178VJI4 | ProteinID:AAF23258.1 | ProteinID:AAF23312.1 |
| ProteinID:AEE74810.1 | ArrayExpress:AT3G09770 | EnsemblPlantsGene:AT3G09770 | RefSeq:AT3G09770 | TAIR:AT3G09770 | RefSeq:AT3G09770-TAIR-G |
| EnsemblPlants:AT3G09770.1 | TAIR:AT3G09770.1 | EMBL:AY074275 | EMBL:AY087831 | Unigene:At.22524 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005623 |
| GO:GO:0005886 | GO:GO:0006464 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009719 | GO:GO:0009737 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016567 | GO:GO:0016740 |
| GO:GO:0019538 | GO:GO:0046872 | GO:GO:0080144 | GO:GO:1901527 | InterPro:IPR001841 | InterPro:IPR013083 |
| RefSeq:NP_566356.1 | ProteinID:OAP05631.1 | PFAM:PF13920 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 |
| PFscan:PS50089 | PANTHER:PTHR22996 | PANTHER:PTHR22996:SF4 | UniProt:Q9S752 | SMART:SM00184 | SUPFAM:SSF57850 |
| UniParc:UPI000009FE04 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : |
Description
LOG2Probable E3 ubiquitin-protein ligase LOG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9S752]
Coordinates
chr3:-:2996179..2998255
Molecular Weight (calculated)
42850.4 Da
IEP (calculated)
6.151
GRAVY (calculated)
-0.650
Length
388 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNISSSGGE GRRRRRRNHT AAPPPPPPPP SSSLPPPPLP TEIQANPIVF AAVTPYPNPN PNPVYQYPAS YYHHPPPGAM PLPPYDHHLQ HHPPHPYHNH
101: SWAPVAMARY PYAGHMMAQP TPYVEHQKAV TIRNDVNLKK ESLRLEPDPD NPGRFLVSFT FDATVSGRIS VIFFAKESED CKLTATKEDI LPPITLDFEK
201: GLGQKFKQSS GSGIDFSVFE DVELFKAAAD TEIYPLAVKA EAAPSGGENE EEERSGSKNA QITQAVYEKD KGEIKIRVVK QILWVNGTRY ELQEIYGIGN
301: TVEGDDDSAD DANDPGKECV ICLSEPRDTT VLPCRHMCMC SGCAKVLRFQ TNRCPICRQP VERLLEIKVH GNNGSGNNTG QGETVEQE
101: SWAPVAMARY PYAGHMMAQP TPYVEHQKAV TIRNDVNLKK ESLRLEPDPD NPGRFLVSFT FDATVSGRIS VIFFAKESED CKLTATKEDI LPPITLDFEK
201: GLGQKFKQSS GSGIDFSVFE DVELFKAAAD TEIYPLAVKA EAAPSGGENE EEERSGSKNA QITQAVYEKD KGEIKIRVVK QILWVNGTRY ELQEIYGIGN
301: TVEGDDDSAD DANDPGKECV ICLSEPRDTT VLPCRHMCMC SGCAKVLRFQ TNRCPICRQP VERLLEIKVH GNNGSGNNTG QGETVEQE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.