Factsheet for GSMUA_Achr5P14690_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr1P23400_001
GSMUA_Achr7P05080_001
GSMUA_Achr7P16360_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G09770.1	GSMUA_Achr10P...	AT2G24762.1	22291198
AT3G09770.1	GSMUA_Achr11P...	AT2G24762.1	22291198
AT3G09770.1	GSMUA_Achr1P23400_001	AT2G24762.1	22291198
AT3G09770.1	GSMUA_Achr7P05080_001	AT2G24762.1	22291198
AT3G09770.1	GSMUA_Achr7P16360_001	AT2G24762.1	22291198
AT3G09770.1	GSMUA_Achr10P...	AT4G25760.1	22291198
AT3G09770.1	GSMUA_Achr11P...	AT4G25760.1	22291198
AT3G09770.1	GSMUA_Achr1P23400_001	AT4G25760.1	22291198
AT3G09770.1	GSMUA_Achr7P05080_001	AT4G25760.1	22291198
AT3G09770.1	GSMUA_Achr7P16360_001	AT4G25760.1	22291198
AT3G09770.1	GSMUA_Achr10P...	AT4G31730.1	22291198
AT3G09770.1	GSMUA_Achr11P...	AT4G31730.1	22291198
AT3G09770.1	GSMUA_Achr1P23400_001	AT4G31730.1	22291198
AT3G09770.1	GSMUA_Achr7P05080_001	AT4G31730.1	22291198
AT3G09770.1	GSMUA_Achr7P16360_001	AT4G31730.1	22291198
AT3G09770.1	GSMUA_Achr10P...	AT4G31730.1	24036454
AT3G09770.1	GSMUA_Achr11P...	AT4G31730.1	24036454
AT3G09770.1	GSMUA_Achr1P23400_001	AT4G31730.1	24036454
AT3G09770.1	GSMUA_Achr7P05080_001	AT4G31730.1	24036454
AT3G09770.1	GSMUA_Achr7P16360_001	AT4G31730.1	24036454
AT3G53410.1	GSMUA_Achr10P...	AT1G22920.1	21798944
AT3G53410.1	GSMUA_Achr10P...	AT4G25760.1	22291198
AT3G53410.1	GSMUA_Achr11P...	AT4G25760.1	22291198
AT3G53410.1	GSMUA_Achr1P23400_001	AT4G25760.1	22291198
AT3G53410.1	GSMUA_Achr7P05080_001	AT4G25760.1	22291198
AT3G53410.1	GSMUA_Achr7P16360_001	AT4G25760.1	22291198
AT3G53410.1	GSMUA_Achr10P...	AT5G57685.1	22291198
AT3G53410.1	GSMUA_Achr11P...	AT5G57685.1	22291198
AT3G53410.1	GSMUA_Achr1P23400_001	AT5G57685.1	22291198
AT3G53410.1	GSMUA_Achr7P05080_001	AT5G57685.1	22291198
AT3G53410.1	GSMUA_Achr7P16360_001	AT5G57685.1	22291198
AT5G03200.1	GSMUA_Achr10P...	AT4G31730.1	22291198
AT5G03200.1	GSMUA_Achr11P...	AT4G31730.1	22291198
AT5G03200.1	GSMUA_Achr1P23400_001	AT4G31730.1	22291198
AT5G03200.1	GSMUA_Achr7P05080_001	AT4G31730.1	22291198
AT5G03200.1	GSMUA_Achr7P16360_001	AT4G31730.1	22291198

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P01960_001	Banana	cytosol	78.5	78.76
GSMUA_Achr11P...	Banana	cytosol	68.73	71.28
Zm00001d015671_P001	Maize	cytosol	51.47	70.22
CDY41587	Canola	cytosol	60.91	68.0
CDX70325	Canola	cytosol	21.82	65.05
GSMUA_Achr2P12340_001	Banana	nucleus	82.74	63.66
VIT_08s0040g01940.t01	Wine grape	cytosol	67.75	57.46
PGSC0003DMT400027153	Potato	nucleus, plastid	58.31	56.47
KRH32464	Soybean	plastid	63.84	56.16
Solyc09g007700.2.1	Tomato	plastid	66.12	56.08
PGSC0003DMT400004461	Potato	plastid	66.12	55.92
KRH19856	Soybean	nucleus	63.19	55.59
Solyc10g086080.1.1	Tomato	nucleus	60.59	55.52
Solyc10g084100.1.1	Tomato	nucleus, plastid	57.65	55.49
AT3G53410.1	Thale cress	cytosol	52.77	54.18
Zm00001d028475_P002	Maize	cytosol	70.36	54.0
EER92535	Sorghum	nucleus	70.36	53.73
PGSC0003DMT400045328	Potato	plastid	61.24	53.71
Os10t0204100-01	Rice	nucleus	74.27	53.65
Bra003133.1-P	Field mustard	nucleus	49.84	52.94
CDY67386	Canola	cytosol	49.84	52.94
TraesCS4D01G221000.1	Wheat	cytosol	69.71	52.84
VIT_06s0004g02970.t01	Wine grape	mitochondrion	59.93	52.72
TraesCS4B01G220700.1	Wheat	cytosol	69.38	52.59
TraesCS4A01G083500.1	Wheat	cytosol	69.06	52.35
TraesCS7B01G390000.1	Wheat	mitochondrion	46.91	52.17
CDY44348	Canola	cytosol	44.63	52.09
CDY13299	Canola	cytosol	49.51	51.7
Bra029788.1-P	Field mustard	nucleus, plastid	63.84	51.44
HORVU0Hr1G008700.4	Barley	cytosol	70.03	50.71
CDY62899	Canola	cytosol	43.32	50.0
Bra028846.1-P	Field mustard	cytosol	43.32	50.0
CDY44729	Canola	plastid	63.19	49.87
Bra034086.1-P	Field mustard	nucleus, plastid	59.93	49.6
CDY41312	Canola	plastid	59.93	49.46
CDY22203	Canola	mitochondrion, plastid	59.93	49.46
AT3G09770.1	Thale cress	plastid	61.56	48.71
KRH05126	Soybean	cytosol	15.31	48.45
GSMUA_Achr3P09070_001	Banana	cytosol	43.32	48.36
KRH67682	Soybean	nucleus	53.42	48.09
KRH22903	Soybean	mitochondrion, nucleus	48.21	47.9
TraesCS7A01G486700.1	Wheat	cytosol	47.23	47.85
KRG95976	Soybean	plastid	57.0	47.81
TraesCS7D01G473200.1	Wheat	cytosol	46.91	47.52
CDY10400	Canola	cytosol	45.93	47.32
AT5G03200.1	Thale cress	mitochondrion	51.79	47.18
Bra009546.1-P	Field mustard	cytosol	45.28	46.8
Os01t0374900-01	Rice	plastid	47.23	46.33
Os03t0254900-02	Rice	cytosol, endoplasmic reticulum	70.36	44.91
HORVU7Hr1G109550.2	Barley	cytosol	47.23	44.07
CDX70324	Canola	cytosol	21.5	39.29
Solyc04g054680.1.1	Tomato	cytosol	40.07	34.36
Solyc04g054650.1.1	Tomato	cytosol	43.32	27.37

Protein Annotations

EnsemblPlants:GSMUA_Achr5P14690_001	EnsemblPlants:GSMUA_Achr5T14690_001	EnsemblPlantsGene:GSMUA_Achr5G14690_001	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22996	PANTHER:PTHR22996:SF4	PFAM:PF13920	PFscan:PS50089
SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000294A744	UniProt:M0SYJ8	MapMan:35.1

Description

Zinc finger, C3HC4 type domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr5G14690_001]

Coordinates

chr5:-:10625266..10633231

Molecular Weight (calculated)

33990.2 Da

IEP (calculated)

5.996

GRAVY (calculated)

-0.496

Length

307 amino acids

Sequence
(BLAST)

001: MPAPLPAPFD HHHRGGGGGA HVEYPANHPG WVGTGRYPPC VPPPPPPHYV EHQKAAVTIR NDVNIKKETL RVEPDEQNFG RFLVAFTFDA TAAGSITVFF
101: FAKEGTACNL TATREDLLKP VTICFKEGLG QKFRQPSGTG IDFSVFDGAQ LIKEGGELDL YPLAVKAEAF PSSNQGPVDE NSNLGTSNSQ ITQALFEKKE
201: NGEYHVRVVK QILWVNQTRY ELQEIYGIGN SVDNDTDGND PGKECVICLS EPRDTTVLPC RHMCMCSECA KVLRFQTHRC PICRQPVERL LEIKVNDRSE
301: QQQEAQG

Best Arabidopsis Sequence Match ( AT3G09770.1 )
(BLAST)

001: MGNISSSGGE GRRRRRRNHT AAPPPPPPPP SSSLPPPPLP TEIQANPIVF AAVTPYPNPN PNPVYQYPAS YYHHPPPGAM PLPPYDHHLQ HHPPHPYHNH
101: SWAPVAMARY PYAGHMMAQP TPYVEHQKAV TIRNDVNLKK ESLRLEPDPD NPGRFLVSFT FDATVSGRIS VIFFAKESED CKLTATKEDI LPPITLDFEK
201: GLGQKFKQSS GSGIDFSVFE DVELFKAAAD TEIYPLAVKA EAAPSGGENE EEERSGSKNA QITQAVYEKD KGEIKIRVVK QILWVNGTRY ELQEIYGIGN
301: TVEGDDDSAD DANDPGKECV ICLSEPRDTT VLPCRHMCMC SGCAKVLRFQ TNRCPICRQP VERLLEIKVH GNNGSGNNTG QGETVEQE

Arabidopsis Description

LOG2Probable E3 ubiquitin-protein ligase LOG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9S752]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.