Factsheet for VIT_06s0004g02970.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 4
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0040g01940.t01	Wine grape	cytosol	67.91	65.47
GSMUA_Achr11P...	Banana	cytosol	51.0	60.14
Zm00001d015671_P001	Maize	cytosol	38.68	60.0
GSMUA_Achr5P14690_001	Banana	cytosol	52.72	59.93
GSMUA_Achr7P01960_001	Banana	cytosol	50.43	57.52
GSMUA_Achr2P12340_001	Banana	nucleus	63.04	55.14
EER92535	Sorghum	nucleus	63.04	54.73
Zm00001d028475_P002	Maize	cytosol	62.46	54.5
TraesCS4B01G220700.1	Wheat	cytosol	61.6	53.09
TraesCS4D01G221000.1	Wheat	cytosol	61.6	53.09
TraesCS4A01G083500.1	Wheat	cytosol	61.32	52.84
KRH22903	Soybean	mitochondrion, nucleus	46.13	52.1
Os10t0204100-01	Rice	nucleus	61.6	50.59
HORVU0Hr1G008700.4	Barley	cytosol	59.6	49.06
TraesCS7B01G390000.1	Wheat	mitochondrion	36.96	46.74
TraesCS7A01G486700.1	Wheat	cytosol	38.68	44.55
TraesCS7D01G473200.1	Wheat	cytosol	38.68	44.55
Os01t0374900-01	Rice	plastid	39.83	44.41
Os03t0254900-02	Rice	cytosol, endoplasmic reticulum	61.03	44.28
HORVU7Hr1G109550.2	Barley	cytosol	37.54	39.82
VIT_05s0020g02680.t01	Wine grape	mitochondrion	43.27	38.52
VIT_14s0128g00180.t01	Wine grape	mitochondrion	37.82	29.66

Protein Annotations

EntrezGene:100250186	wikigene:100250186	Gene3D:3.30.40.10	MapMan:35.1	ProteinID:CCB43664	ProteinID:CCB43664.1
UniProt:F6GU00	EMBL:FN594951	InterPro:IPR001841	InterPro:IPR013083	EntrezGene:LOC100250186	wikigene:LOC100250186
PFAM:PF13920	PFscan:PS50089	PANTHER:PTHR22996	PANTHER:PTHR22996:SF4	SMART:SM00184	SUPFAM:SSF57850
TIGR:TC63694	UniParc:UPI00015C7EEE	ArrayExpress:VIT_06s0004g02970	EnsemblPlantsGene:VIT_06s0004g02970	EnsemblPlants:VIT_06s0004g02970.t01	unigene:Vvi.17837
RefSeq:XP_002285111	RefSeq:XP_002285111.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

No Description!

Coordinates

chr6:-:3700439..3704657

Molecular Weight (calculated)

38479.7 Da

IEP (calculated)

6.772

GRAVY (calculated)

-0.428

Length

349 amino acids

Sequence
(BLAST)

001: MGNTGSSRRR HQRSHRNHPA LPPQLSPQPE ITANRYVFAA ATAYTSAYPN PNQPYYYNYN GHYPPVPVPL SGSYTRLHRA GGAIPNWVGG HQPCGVAPPP
101: PAPYVEHQKA ITIRNDVNIK KETLRVEPDE ENPGKFLVAF TFDATAAGSI TVVFFGKEGI SGDLITVKEG VIEPVTVSFQ QGLDQKFKQP SGTGIDFSMF
201: EETELMQESD IKVCPLLVKA GAYPLDHSQS EGNLTGNSQI TQAVFEKEKG VQQVRVVKQI LWAEGMRYEL QEIFGIGNSV DDNADGTDSG KECVICLSEP
301: RDTTVLPCRH MCMCGGCAKV LRFQMNRCPI CRQPVEQLLE IKVNNKSDV

Best Arabidopsis Sequence Match ( AT3G09770.1 )
(BLAST)

001: MGNISSSGGE GRRRRRRNHT AAPPPPPPPP SSSLPPPPLP TEIQANPIVF AAVTPYPNPN PNPVYQYPAS YYHHPPPGAM PLPPYDHHLQ HHPPHPYHNH
101: SWAPVAMARY PYAGHMMAQP TPYVEHQKAV TIRNDVNLKK ESLRLEPDPD NPGRFLVSFT FDATVSGRIS VIFFAKESED CKLTATKEDI LPPITLDFEK
201: GLGQKFKQSS GSGIDFSVFE DVELFKAAAD TEIYPLAVKA EAAPSGGENE EEERSGSKNA QITQAVYEKD KGEIKIRVVK QILWVNGTRY ELQEIYGIGN
301: TVEGDDDSAD DANDPGKECV ICLSEPRDTT VLPCRHMCMC SGCAKVLRFQ TNRCPICRQP VERLLEIKVH GNNGSGNNTG QGETVEQE

Arabidopsis Description

LOG2Probable E3 ubiquitin-protein ligase LOG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9S752]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.