Factsheet for VIT_14s0128g00180.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
nucleus 2
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G062460.2	Barley	cytosol, nucleus	25.62	55.34
TraesCS1B01G258900.1	Wheat	cytosol	28.31	55.26
GSMUA_Achr3P09070_001	Banana	cytosol	33.93	54.91
PGSC0003DMT400073576	Potato	plastid	46.97	54.29
Solyc01g098750.2.1	Tomato	plastid	46.97	54.15
VIT_05s0020g02680.t01	Wine grape	mitochondrion	45.84	52.04
EES19487	Sorghum	nucleus	36.4	47.65
Zm00001d038127_P001	Maize	nucleus	35.96	47.62
Os05t0397650-00	Rice	nucleus	35.96	45.07
VIT_08s0040g01940.t01	Wine grape	cytosol	33.03	40.61
VIT_06s0004g02970.t01	Wine grape	mitochondrion	29.66	37.82

Protein Annotations

EntrezGene:100852866	Gene3D:3.30.40.10	MapMan:35.1	ProteinID:CCB59893	ProteinID:CCB59893.1	UniProt:F6HYX9
EMBL:FN596501	InterPro:IPR001841	InterPro:IPR013083	PFAM:PF13920	PRINTS:PR01217	PFscan:PS50089
PANTHER:PTHR22996	PANTHER:PTHR22996:SF4	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000210AA75	ArrayExpress:VIT_14s0128g00180
EnsemblPlantsGene:VIT_14s0128g00180	EnsemblPlants:VIT_14s0128g00180.t01	unigene:Vvi.15458	RefSeq:XP_010659828.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr14:+:2856462..2864653

Molecular Weight (calculated)

48758.8 Da

IEP (calculated)

7.303

GRAVY (calculated)

-0.491

Length

445 amino acids

Sequence
(BLAST)

001: MGISLSKFRR HRHHRRHNRH QAQPQERLQQ PIAAASSSSL ETPPLQPTPP PCLPSTSQPT PSPCLPSPSP STPSASLPPP SPPTPPSLPP PSPPTPPPFL
101: PSPSSTPPPP RPSSQPSFVF AANAPFPSTT QGPYAGLPSP SAPAQLSSNY GSPMTMDGFG FSQFPANFNR GYSGWGGYVP TPPPLPSPSP PPYVDHMSAR
201: KIKNDVNVHK DTIRVDWDEK NLDSHLVSFT FDALVDGSIT IFYFAKEGNN CSFTPLYPEI YMPIRIPFQN GLGQKFCQRS GTGIDLGFFA LDDLSRPSQN
301: EEVFPLVIYA ESSLPSLPPM HEQLGQPPPI APSRAQITQA VLEKNNEGHF QVKVIKQILW VDGVRYELRE LYGIENSDER GIGNNDTGKE CVICMTEPND
401: TVVLPCRHVC LCSECAKQLR LQSNKCPVCR HPIQELIVIV HKEQS

Best Arabidopsis Sequence Match ( AT5G19080.1 )
(BLAST)

001: MGISLSKRRR DNNNNHHHPH HNPPYYYSDP PPQQPPPQNG YSYSHNYPVS TPQLSLPPPP AQPPSSSQPP PSQISYRPYG QNYHQNQYYP QQAPPYFTGY
101: HHNGFNPMMR PVYFGPTPVA VMEPPAPYVE HQTAKKVKND VNVNKATVRL VADDLNPGHY LVSFVFDALF DGSFTIIFFG EEESKCTIVP HLPEAFPPIK
201: VPFQKGAGQK FLQAPGTGID LGFFSLDDLS KPSPEEVYPL VISAETVISP SSVSEEPLVH KQITQAVLEK TNDGSFKVKV MKQILWIEGE RYELQELYGI
301: DNSITQGTAA SGLEDTGGKE CVICLTEPKD TAVMPCRHLC LCSDCAEELR FQTNKCPICR QPIHELVKIK VESSDEQH

Arabidopsis Description

LUL3Probable E3 ubiquitin-protein ligase LUL3 [Source:UniProtKB/Swiss-Prot;Acc:Q84ME1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.