Factsheet for VIT_08s0040g01940.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0038g04360.t01
VIT_04s0008g07370.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G09770.1	VIT_04s0008g07370.t01	AT2G24762.1	22291198
AT3G09770.1	VIT_04s0008g07370.t01	AT4G25760.1	22291198
AT3G09770.1	VIT_04s0008g07370.t01	AT4G31730.1	22291198
AT3G09770.1	VIT_04s0008g07370.t01	AT4G31730.1	24036454
AT3G53410.1	VIT_03s0038g04360.t01	AT1G22920.1	21798944
AT3G53410.1	VIT_04s0008g07370.t01	AT4G25760.1	22291198
AT3G53410.1	VIT_04s0008g07370.t01	AT5G57685.1	22291198
AT5G03200.1	VIT_04s0008g07370.t01	AT4G31730.1	22291198

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g007700.2.1	Tomato	plastid	76.24	76.24
PGSC0003DMT400004461	Potato	plastid	76.24	76.03
PGSC0003DMT400027153	Potato	nucleus, plastid	63.54	72.56
Solyc10g084100.1.1	Tomato	nucleus, plastid	63.81	72.41
KRH19856	Soybean	nucleus	67.4	69.91
KRH32464	Soybean	plastid	67.4	69.91
CDY41587	Canola	cytosol	51.66	68.0
VIT_06s0004g02970.t01	Wine grape	mitochondrion	65.47	67.91
GSMUA_Achr5P14690_001	Banana	cytosol	57.46	67.75
PGSC0003DMT400045328	Potato	plastid	64.09	66.29
Zm00001d015671_P001	Maize	cytosol	41.16	66.22
Solyc10g086080.1.1	Tomato	nucleus	61.05	65.97
GSMUA_Achr7P01960_001	Banana	cytosol	54.97	65.03
GSMUA_Achr11P...	Banana	cytosol	53.04	64.86
CDX70325	Canola	cytosol	18.23	64.08
KRH05126	Soybean	cytosol	17.13	63.92
KRH67682	Soybean	nucleus	58.84	62.46
EER92535	Sorghum	nucleus	68.78	61.94
KRG95976	Soybean	plastid	62.43	61.75
GSMUA_Achr2P12340_001	Banana	nucleus	67.4	61.15
CDY41312	Canola	plastid	62.43	60.75
Zm00001d028475_P002	Maize	cytosol	67.13	60.75
Bra034086.1-P	Field mustard	nucleus, plastid	62.15	60.65
TraesCS4D01G221000.1	Wheat	cytosol	67.4	60.25
TraesCS4B01G220700.1	Wheat	cytosol	67.4	60.25
TraesCS4A01G083500.1	Wheat	cytosol	67.4	60.25
CDY22203	Canola	mitochondrion, plastid	61.6	59.95
Bra029788.1-P	Field mustard	nucleus, plastid	62.15	59.06
AT3G09770.1	Thale cress	plastid	62.98	58.76
Os10t0204100-01	Rice	nucleus	68.51	58.35
AT3G53410.1	Thale cress	cytosol	48.07	58.19
CDY44729	Canola	plastid	62.43	58.1
HORVU0Hr1G008700.4	Barley	cytosol	65.47	55.9
CDY67386	Canola	cytosol	44.48	55.71
Bra003133.1-P	Field mustard	nucleus	44.48	55.71
CDY13299	Canola	cytosol	44.48	54.76
AT5G03200.1	Thale cress	mitochondrion	48.62	52.23
CDY62899	Canola	cytosol	37.85	51.5
Bra028846.1-P	Field mustard	cytosol	37.85	51.5
CDY10400	Canola	cytosol	42.27	51.34
CDY44348	Canola	cytosol	37.29	51.33
Bra009546.1-P	Field mustard	cytosol	41.71	50.84
TraesCS7B01G390000.1	Wheat	mitochondrion	38.12	50.0
Os03t0254900-02	Rice	cytosol, endoplasmic reticulum	64.64	48.65
TraesCS7A01G486700.1	Wheat	cytosol	40.61	48.51
TraesCS7D01G473200.1	Wheat	cytosol	40.61	48.51
CDX70324	Canola	cytosol	22.38	48.21
Os01t0374900-01	Rice	plastid	40.33	46.65
HORVU7Hr1G109550.2	Barley	cytosol	39.23	43.16
VIT_05s0020g02680.t01	Wine grape	mitochondrion	46.41	42.86
Solyc04g054680.1.1	Tomato	cytosol	36.46	36.87
VIT_14s0128g00180.t01	Wine grape	mitochondrion	40.61	33.03
Solyc04g054650.1.1	Tomato	cytosol	38.67	28.81

Protein Annotations

EntrezGene:100260106	wikigene:100260106	Gene3D:3.30.40.10	MapMan:35.1	EMBL:AM451749	ProteinID:CAN69886
ProteinID:CAN69886.1	ProteinID:CCB57068	ProteinID:CCB57068.1	UniProt:F6HR19	EMBL:FN596008	InterPro:IPR001841
InterPro:IPR013083	EntrezGene:LOC100260106	wikigene:LOC100260106	PFAM:PF13920	PFscan:PS50089	PANTHER:PTHR22996
PANTHER:PTHR22996:SF4	SMART:SM00184	SUPFAM:SSF57850	TIGR:TC57379	TIGR:TC63906	UniParc:UPI0001983D4D
ArrayExpress:VIT_08s0040g01940	EnsemblPlantsGene:VIT_08s0040g01940	EnsemblPlants:VIT_08s0040g01940.t01	unigene:Vvi.7189	RefSeq:XP_002280999	RefSeq:XP_002280999.1
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr8:+:13025797..13030340

Molecular Weight (calculated)

40242.7 Da

IEP (calculated)

6.085

GRAVY (calculated)

-0.578

Length

362 amino acids

Sequence
(BLAST)

001: MGNIGSSSVN GRRRHGSRRS HPPPPPPQPP QPEITPNQYV FAAPYPTQYP NPNPPQYYQY PGFYPPPPAA MPVPLPAPYD HHHRGGPPPH MDPAHANFVA
101: GRYSCGPVVP PHAPYVEHQK AVTIRNDVNL KKETLRLEPD EEHPGRFLVA FTFDATVPGS ITIIFFAKEG EDCSLSPMKE NLEPVTVHFQ QGLGQKFRQP
201: TGTGIDFSTF EESELLKEGD MDVYPLEVKA EASPINQIGA DGNPIPGTMN SQITKAVFEK EKGEYQVRVV KQILWVNGMR YELQEIYGIG NSVDGDFDSN
301: DPGKECVICL SEPRDTTVLP CRHMCMCSGC AKVLRFQTDR CPICRQLVER LLEIKVSNGS DD

Best Arabidopsis Sequence Match ( AT3G09770.1 )
(BLAST)

001: MGNISSSGGE GRRRRRRNHT AAPPPPPPPP SSSLPPPPLP TEIQANPIVF AAVTPYPNPN PNPVYQYPAS YYHHPPPGAM PLPPYDHHLQ HHPPHPYHNH
101: SWAPVAMARY PYAGHMMAQP TPYVEHQKAV TIRNDVNLKK ESLRLEPDPD NPGRFLVSFT FDATVSGRIS VIFFAKESED CKLTATKEDI LPPITLDFEK
201: GLGQKFKQSS GSGIDFSVFE DVELFKAAAD TEIYPLAVKA EAAPSGGENE EEERSGSKNA QITQAVYEKD KGEIKIRVVK QILWVNGTRY ELQEIYGIGN
301: TVEGDDDSAD DANDPGKECV ICLSEPRDTT VLPCRHMCMC SGCAKVLRFQ TNRCPICRQP VERLLEIKVH GNNGSGNNTG QGETVEQE

Arabidopsis Description

LOG2Probable E3 ubiquitin-protein ligase LOG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9S752]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.