Factsheet for VIT_05s0020g02680.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0008g07370.t01
VIT_07s0151g00650.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G19080.1	VIT_04s0008g07370.t01	AT4G25760.1	22291198
AT5G19080.1	VIT_07s0151g00650.t01	AT5G48385.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH51029	Soybean	mitochondrion	51.02	59.52
KRH20904	Soybean	mitochondrion	55.87	59.03
KRH11381	Soybean	mitochondrion	55.61	58.45
KRH02118	Soybean	cytosol, mitochondrion	41.07	58.33
Solyc01g080080.2.1	Tomato	nucleus	22.96	57.69
CDY13950	Canola	cytosol	14.54	57.58
GSMUA_Achr3P09070_001	Banana	cytosol	39.8	56.73
TraesCS1B01G258900.1	Wheat	cytosol	32.91	56.58
HORVU1Hr1G062460.2	Barley	cytosol, nucleus	29.59	56.31
CDY13958	Canola	cytosol	27.55	56.25
AT3G06140.1	Thale cress	mitochondrion	49.74	54.32
CDY05235	Canola	mitochondrion	48.98	52.6
Bra020773.1-P	Field mustard	mitochondrion	47.96	51.79
CDY24715	Canola	mitochondrion	47.45	51.24
Zm00001d038127_P001	Maize	nucleus	42.86	50.0
EES19487	Sorghum	nucleus	43.37	50.0
CDX92559	Canola	mitochondrion	46.43	48.92
Bra002208.1-P	Field mustard	mitochondrion, nucleus	46.43	48.66
CDY13949	Canola	mitochondrion	47.45	48.19
Os05t0397650-00	Rice	nucleus	43.62	48.17
AT5G19080.1	Thale cress	cytosol	45.66	47.35
VIT_08s0040g01940.t01	Wine grape	cytosol	42.86	46.41
VIT_14s0128g00180.t01	Wine grape	mitochondrion	52.04	45.84
VIT_06s0004g02970.t01	Wine grape	mitochondrion	38.52	43.27

Protein Annotations

EntrezGene:100266660	wikigene:100266660	Gene3D:3.30.40.10	MapMan:35.1	ProteinID:CCB50387	ProteinID:CCB50387.1
UniProt:F6HDL6	EMBL:FN595749	InterPro:IPR001841	InterPro:IPR013083	EntrezGene:LOC100266660	wikigene:LOC100266660
PFAM:PF13920	PFscan:PS50089	PANTHER:PTHR22996	PANTHER:PTHR22996:SF4	SMART:SM00184	SUPFAM:SSF57850
UniParc:UPI00015C818A	ArrayExpress:VIT_05s0020g02680	EnsemblPlantsGene:VIT_05s0020g02680	EnsemblPlants:VIT_05s0020g02680.t01	RefSeq:XP_002277630	RefSeq:XP_002277630.1
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr5:+:4388739..4406579

Molecular Weight (calculated)

44440.3 Da

IEP (calculated)

6.081

GRAVY (calculated)

-0.726

Length

392 amino acids

Sequence
(BLAST)

001: MGISWSNRRR NNYLQNRPPP PPPPPPPQLL SSSYYYPSEP PSLPPPPPPS NPSLPQPHNY AFTSNPPYPP PPYPPHNLYP AHPPPIYSSS YYCSGPYNSC
101: NYANPMMARS NYQPYYANHG NYWPPIRPPV AAPPPQQPPP YVEHQNAKKV RNDVNVHKDT LRLEVDEQNP DHYLVSFIFD ALFDGSITIY YFAKEESNCR
201: FSPLFPEAYM PVRIPFQKGP GQKFRQPSGT GIDLGFFELD DLSKPSPGED VFPLVISAET SLPLHPTDEH SGDPTPRTSP HMQITQAVLE KHNGDPFQVR
301: VIRQILWVNE VRYELREIYG IASSASEGFN DNDSGKECVI CMTEPKDTAV LPCRHMCMCS ECAKELRLQS NKCPICRQPI EELIEIKIDN DQ

Best Arabidopsis Sequence Match ( AT3G06140.1 )
(BLAST)

001: MGISFSNNNR RRDNNNRRHL HHYPPPPPYY YLDPPPPPPP FPPHYDYNYS NYHLSPPLPP QPQINSCSYG HYHYHPQPPQ YFTTAQPNWW GPMMRPAYYC
101: PPQPQTQPPK PYLEQQNAKK VRNDVNVHRD TVRLEVDDLV PGHHLVSFVF DALFDGSFTI TFFAKEEPNC TIIPQFPEVY SPTRFHFQKG PGQKFLQPSG
201: TGTDLSFFVL DDLSKPLEED VYPLVISAET IISPNSISEQ SSVHKQVTQA VLEKDNDGSF KVKVVKQILW IEGVRYELRE LYGSTTQGAA SGLDESGSGT
301: ECVICMTEAK DTAVLPCRHL CMCSDCAKEL RLQSNKCPIC RQPIEELLEI KMNSSDEQH

Arabidopsis Description

LUL4Probable E3 ubiquitin-protein ligase LUL4 [Source:UniProtKB/Swiss-Prot;Acc:Q8LA32]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.