Factsheet for GSMUA_Achr3P09070_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr1P12990_001
GSMUA_Achr1P23400_001
GSMUA_Achr2P05710_001
GSMUA_Achr3P16830_001
GSMUA_Achr7P05080_001
GSMUA_Achr7P16360_001
GSMUA_Achr8P29000_001
GSMUA_Achr9P08130_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G19080.1	GSMUA_Achr1P12990_001	AT3G12470.1	21798944
AT5G19080.1	GSMUA_Achr10P...	AT4G25760.1	22291198
AT5G19080.1	GSMUA_Achr11P...	AT4G25760.1	22291198
AT5G19080.1	GSMUA_Achr1P23400_001	AT4G25760.1	22291198
AT5G19080.1	GSMUA_Achr7P05080_001	AT4G25760.1	22291198
AT5G19080.1	GSMUA_Achr7P16360_001	AT4G25760.1	22291198
AT5G19080.1	GSMUA_Achr2P05710_001	AT5G48385.1	21798944
AT5G19080.1	GSMUA_Achr3P16830_001	AT5G48385.1	21798944
AT5G19080.1	GSMUA_Achr8P29000_001	AT5G48385.1	21798944
AT5G19080.1	GSMUA_Achr9P08130_001	AT5G48385.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G062460.2	Barley	cytosol, nucleus	44.0	58.74
TraesCS1B01G258900.1	Wheat	cytosol	48.0	57.89
CDY13950	Canola	cytosol	18.18	50.51
Solyc01g080080.2.1	Tomato	nucleus	27.64	48.72
CDY13958	Canola	cytosol	33.45	47.92
Zm00001d038127_P001	Maize	nucleus	56.73	46.43
EES19487	Sorghum	nucleus	56.73	45.88
Os05t0397650-00	Rice	nucleus	56.36	43.66
GSMUA_Achr5P14690_001	Banana	cytosol	48.36	43.32
GSMUA_Achr11P...	Banana	cytosol	46.55	43.24
KRH51029	Soybean	mitochondrion	52.73	43.15
GSMUA_Achr7P01960_001	Banana	cytosol	47.27	42.48
Solyc01g098750.2.1	Tomato	plastid	56.73	40.41
AT3G06140.1	Thale cress	mitochondrion	52.36	40.11
KRH20904	Soybean	mitochondrion	53.82	39.89
VIT_05s0020g02680.t01	Wine grape	mitochondrion	56.73	39.8
PGSC0003DMT400073576	Potato	plastid	55.27	39.48
KRH11381	Soybean	mitochondrion	53.09	39.14
KRH02118	Soybean	cytosol, mitochondrion	39.27	39.13
CDY24715	Canola	mitochondrion	51.27	38.84
Bra020773.1-P	Field mustard	mitochondrion	51.27	38.84
CDY05235	Canola	mitochondrion	50.55	38.08
CDX92559	Canola	mitochondrion	48.73	36.02
Bra002208.1-P	Field mustard	mitochondrion, nucleus	48.36	35.56
AT5G19080.1	Thale cress	cytosol	48.36	35.19
GSMUA_Achr2P12340_001	Banana	nucleus	50.91	35.09
CDY13949	Canola	mitochondrion	48.73	34.72
VIT_14s0128g00180.t01	Wine grape	mitochondrion	54.91	33.93

Protein Annotations

EnsemblPlants:GSMUA_Achr3P09070_001	EnsemblPlants:GSMUA_Achr3T09070_001	EnsemblPlantsGene:GSMUA_Achr3G09070_001	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22996	PANTHER:PTHR22996:SF4	PFAM:PF13920	PFscan:PS50089
SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000296892F	UniProt:M0SD24	MapMan:35.1

Description

Putative RING finger protein 157 [Source:GMGC_GENE;Acc:GSMUA_Achr3G09070_001]

Coordinates

chr3:-:6549816..6553976

Molecular Weight (calculated)

30192.2 Da

IEP (calculated)

5.153

GRAVY (calculated)

-0.244

Length

275 amino acids

Sequence
(BLAST)

001: MPPPPPPPIH SPRMAGQPQA LPPPPFVEQT KTVKNDVNVH KDSIRLVPDE QNADHHLVSF TFDAMVDGSV TIYYFAKEGA NATISSIYVD IYTPKGITFL
101: KGLGQTFIQP SGSGIDLGFF DLDELSKPLE GDVFPLVIYA KSCRPSPSKD VHGIQSSSPA HAQITQAVIE KSNDGNFKVK VVKQILWVED ERYELQEIFG
201: LSPVEAKISG GDDDDMGKEC VICLSEPRDT TVLPCRHMCM CGVCAKALRL QSNKCPICRQ PVEQLMEIKV NTADP

Best Arabidopsis Sequence Match ( AT3G06140.1 )
(BLAST)

001: MGISFSNNNR RRDNNNRRHL HHYPPPPPYY YLDPPPPPPP FPPHYDYNYS NYHLSPPLPP QPQINSCSYG HYHYHPQPPQ YFTTAQPNWW GPMMRPAYYC
101: PPQPQTQPPK PYLEQQNAKK VRNDVNVHRD TVRLEVDDLV PGHHLVSFVF DALFDGSFTI TFFAKEEPNC TIIPQFPEVY SPTRFHFQKG PGQKFLQPSG
201: TGTDLSFFVL DDLSKPLEED VYPLVISAET IISPNSISEQ SSVHKQVTQA VLEKDNDGSF KVKVVKQILW IEGVRYELRE LYGSTTQGAA SGLDESGSGT
301: ECVICMTEAK DTAVLPCRHL CMCSDCAKEL RLQSNKCPIC RQPIEELLEI KMNSSDEQH

Arabidopsis Description

LUL4Probable E3 ubiquitin-protein ligase LUL4 [Source:UniProtKB/Swiss-Prot;Acc:Q8LA32]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.