Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- endoplasmic reticulum 3
- peroxisome 1
- plastid 4
- cytosol 1
- extracellular 2
- vacuole 2
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G007100.1 | Wheat | cytosol | 38.42 | 36.32 |
| TraesCS4A01G026000.1 | Wheat | cytosol | 36.32 | 36.13 |
| Os01t0660800-01 | Rice | nucleus | 37.37 | 35.68 |
| TraesCS3A01G278600.1 | Wheat | cytosol | 35.79 | 35.42 |
| Zm00001d043985_P001 | Maize | cytosol, nucleus, plastid | 36.84 | 35.0 |
| TraesCS3D01G278900.1 | Wheat | nucleus | 37.89 | 34.62 |
| TraesCS3B01G312800.1 | Wheat | nucleus | 37.89 | 34.62 |
| TraesCS3A01G239600.1 | Wheat | cytosol | 35.79 | 34.52 |
| TraesCS3D01G239900.1 | Wheat | cytosol, nucleus, plastid | 35.79 | 34.52 |
| TraesCS3B01G268100.1 | Wheat | cytosol, nucleus, plastid | 35.79 | 34.52 |
| TraesCS7A01G302600.1 | Wheat | cytosol | 37.37 | 33.97 |
| HORVU7Hr1G071770.1 | Barley | cytosol | 37.89 | 33.96 |
| EES03385 | Sorghum | cytosol, nucleus, plastid | 35.79 | 33.83 |
| Os04t0225100-01 | Rice | cytosol | 36.84 | 33.18 |
| TraesCS7B01G202700.1 | Wheat | cytosol | 36.32 | 33.17 |
| EES03384 | Sorghum | nucleus | 35.26 | 33.17 |
| TraesCS3A01G239500.1 | Wheat | nucleus | 34.74 | 33.0 |
| PGSC0003DMT400036459 | Potato | extracellular | 37.37 | 32.87 |
| Os01t0737600-00 | Rice | cytosol | 35.79 | 32.69 |
| VIT_08s0040g00710.t01 | Wine grape | cytosol | 35.79 | 32.69 |
| Zm00001d011507_P001 | Maize | cytosol | 34.74 | 32.67 |
| Solyc01g103460.2.1 | Tomato | cytosol | 36.32 | 32.39 |
| EES01442 | Sorghum | nucleus | 35.26 | 32.21 |
| Solyc11g006480.1.1 | Tomato | nucleus | 30.0 | 32.2 |
| KRH00115 | Soybean | nucleus | 35.79 | 31.92 |
| KRH49260 | Soybean | cytosol, nucleus, peroxisome | 35.26 | 31.6 |
| TraesCS3D01G239800.1 | Wheat | nucleus | 33.16 | 31.5 |
| PGSC0003DMT400093830 | Potato | cytosol | 33.68 | 31.22 |
| PGSC0003DMT400064032 | Potato | nucleus | 35.26 | 31.16 |
| TraesCS2A01G565200.1 | Wheat | cytosol | 37.89 | 31.03 |
| TraesCS7D01G297900.1 | Wheat | cytosol | 30.53 | 31.02 |
| HORVU3Hr1G069990.1 | Barley | nucleus | 37.37 | 31.0 |
| TraesCS2B01G625700.1 | Wheat | cytosol | 37.89 | 30.9 |
| TraesCS6B01G430200.1 | Wheat | cytosol | 32.11 | 30.5 |
| Solyc08g007350.1.1 | Tomato | cytosol | 37.37 | 30.21 |
| PGSC0003DMT400094103 | Potato | mitochondrion | 33.68 | 30.05 |
| EES01441 | Sorghum | cytosol, nucleus, plastid | 33.16 | 30.0 |
| Solyc08g078620.1.1 | Tomato | mitochondrion | 32.63 | 29.95 |
| TraesCS6A01G390200.1 | Wheat | nucleus | 31.05 | 29.8 |
| Solyc10g078200.1.1 | Tomato | nucleus | 32.11 | 29.76 |
| Os11t0222320-00 | Rice | cytosol, nucleus | 21.05 | 29.63 |
| EES01443 | Sorghum | cytosol | 31.58 | 29.56 |
| PGSC0003DMT400075613 | Potato | nucleus | 34.21 | 29.55 |
| Solyc12g094540.1.1 | Tomato | cytosol | 31.58 | 29.41 |
| Zm00001d043554_P001 | Maize | cytosol | 31.58 | 29.41 |
| PGSC0003DMT400032474 | Potato | cytosol, nucleus, vacuole | 35.79 | 29.18 |
| KRH00114 | Soybean | cytosol | 34.21 | 28.76 |
| KRH49255 | Soybean | nucleus | 35.79 | 28.57 |
| Solyc12g042390.1.1 | Tomato | cytosol | 32.63 | 28.57 |
| KXG33324 | Sorghum | cytosol | 29.47 | 28.43 |
| HORVU0Hr1G006750.1 | Barley | nucleus | 30.0 | 28.22 |
| PGSC0003DMT400032554 | Potato | cytosol | 37.37 | 28.17 |
| KRH00116 | Soybean | cytosol | 31.05 | 27.96 |
| Os07t0112300-00 | Rice | mitochondrion | 16.84 | 27.59 |
| EES03381 | Sorghum | nucleus | 32.11 | 26.99 |
| Os01t0737700-00 | Rice | nucleus | 32.63 | 26.5 |
| TraesCS3D01G239600.1 | Wheat | cytosol | 32.63 | 26.27 |
| OQU87276 | Sorghum | nucleus | 30.53 | 25.66 |
| TraesCS3B01G267900.1 | Wheat | cytosol | 33.16 | 25.61 |
| TraesCS1A01G315700.1 | Wheat | mitochondrion | 25.79 | 24.62 |
| TraesCS1B01G327900.1 | Wheat | mitochondrion | 25.79 | 24.62 |
| KRH00112 | Soybean | nucleus | 25.79 | 24.5 |
| TraesCS1D01G315900.1 | Wheat | mitochondrion | 25.26 | 24.12 |
| KRH36952 | Soybean | cytosol | 25.79 | 23.79 |
| AT3G12410.1 | Thale cress | plastid | 25.79 | 21.3 |
| Zm00001d047288_P001 | Maize | nucleus | 22.63 | 21.29 |
| KRH11911 | Soybean | nucleus | 25.26 | 21.05 |
| Bra038722.1-P | Field mustard | cytosol | 23.68 | 20.74 |
| Bra038717.1-P | Field mustard | cytosol | 24.21 | 20.54 |
| CDY50548 | Canola | cytosol | 24.21 | 20.54 |
| AT2G36110.1 | Thale cress | mitochondrion | 25.26 | 20.08 |
| Bra038721.1-P | Field mustard | plastid | 18.95 | 19.67 |
| Bra038723.1-P | Field mustard | cytosol | 22.63 | 19.55 |
| CDY50341 | Canola | cytosol | 22.63 | 19.55 |
| EES02313 | Sorghum | mitochondrion, plastid | 24.74 | 19.42 |
| AT3G12460.1 | Thale cress | cytosol, nucleus, plastid | 24.74 | 19.42 |
| CDY71159 | Canola | cytosol | 25.79 | 19.14 |
| AT3G12470.1 | Thale cress | mitochondrion | 22.11 | 19.09 |
| CDY50545 | Canola | cytosol, nucleus, plastid | 23.16 | 18.97 |
| Zm00001d018645_P001 | Maize | mitochondrion | 26.84 | 18.82 |
| Zm00001d036734_P001 | Maize | nucleus | 26.32 | 18.59 |
| AT3G12430.1 | Thale cress | cytosol, nucleus, plastid | 23.16 | 18.49 |
| OQU88309 | Sorghum | mitochondrion | 23.68 | 18.44 |
| AT3G12420.1 | Thale cress | cytosol | 17.89 | 18.38 |
| CDY50339 | Canola | plastid | 16.84 | 17.88 |
| CDY50340 | Canola | nucleus | 14.21 | 16.36 |
| Os01t0660500-00 | Rice | mitochondrion | 32.63 | 15.86 |
| Zm00001d011513_P001 | Maize | plastid | 33.16 | 14.45 |
| GSMUA_AchrUn_... | Banana | nucleus | 21.58 | 14.29 |
| Zm00001d022094_P001 | Maize | nucleus | 28.95 | 13.03 |
| AT3G12440.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 23.16 | 12.46 |
| EER95744 | Sorghum | nucleus | 28.95 | 11.29 |
| Os07t0112400-00 | Rice | mitochondrion | 27.37 | 10.48 |
| TraesCS2A01G262300.1 | Wheat | cytosol, mitochondrion, nucleus | 28.95 | 9.39 |
| TraesCS2D01G261700.1 | Wheat | cytosol, mitochondrion, nucleus | 26.84 | 8.87 |
| Zm00001d010107_P001 | Maize | nucleus | 28.42 | 5.25 |
| TraesCS2B01G279800.1 | Wheat | mitochondrion, plastid | 0.0 | 0.0 |
Protein Annotations
| InterPro:3'-5'_exonuclease_dom | Gene3D:3.30.420.10 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 |
| GO:GO:0004518 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008408 |
| GO:GO:0009987 | GO:GO:0016787 | GO:GO:0090305 | EnsemblPlantsGene:GSMUA_Achr1G12990_001 | EnsemblPlants:GSMUA_Achr1P12990_001 | EnsemblPlants:GSMUA_Achr1T12990_001 |
| InterPro:IPR036397 | UniProt:M0RZF7 | PFAM:PF01612 | PANTHER:PTHR13620 | PANTHER:PTHR13620:SF34 | InterPro:RNaseH-like_sf |
| InterPro:RNaseH_sf | SMART:SM00474 | SUPFAM:SSF53098 | UniParc:UPI0002968AA3 | SEG:seg | : |
Description
3-5 exonuclease domain-containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr1G12990_001]
Coordinates
chr1:-:9954000..9954572
Molecular Weight (calculated)
20205.2 Da
IEP (calculated)
6.382
GRAVY (calculated)
0.281
Length
190 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSTVRAHIA GSHVTVTVTC VASTVLAQLP ALRSASGYSK LVVGLDIEWL SSDRNGKVAL LQLCSGTQCL IVQLHHLDYV PVSLAGFLAD PTVDFVGVGI
101: TSDAQKLRED YGWGVHNVVE LAPLAAKKYG PNAGQSLVDL SRSVVEISID KPASVTCSDW TAKHLSHDQI VYAATDAYVS YLIGEKLLAN
101: TSDAQKLRED YGWGVHNVVE LAPLAAKKYG PNAGQSLVDL SRSVVEISID KPASVTCSDW TAKHLSHDQI VYAATDAYVS YLIGEKLLAN
001: MARIRRRIQK RHIHENRYID FFGERLIVTV THTTSTIRRW IHSIRFFSRL RSSHPLVVGL DVQWTPGGSD PPPDILQLCV GNRCLIIQLS HCKRIPEVLR
101: SFLEDETITF VGVWNSQDQG KLERFRHQLE IWRLLDIRHY LPTRLLNSSF EKIVEECLGY KGVRKDKEIC MSNWGARSLS HDQIVQASDD VYVCCKLGVK
201: ECIWKERSNV KERIWKESSN VKEHIWKESS KLYFVGVCF
101: SFLEDETITF VGVWNSQDQG KLERFRHQLE IWRLLDIRHY LPTRLLNSSF EKIVEECLGY KGVRKDKEIC MSNWGARSLS HDQIVQASDD VYVCCKLGVK
201: ECIWKERSNV KERIWKESSN VKEHIWKESS KLYFVGVCF
Arabidopsis Description
Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SIH3]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.