Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g094540.1.1 | Tomato | cytosol | 85.91 | 92.65 |
| PGSC0003DMT400093830 | Potato | cytosol | 55.91 | 60.0 |
| PGSC0003DMT400094103 | Potato | mitochondrion | 47.73 | 49.3 |
| Zm00001d011507_P001 | Maize | cytosol | 44.55 | 48.51 |
| PGSC0003DMT400064032 | Potato | nucleus | 45.45 | 46.51 |
| EES03384 | Sorghum | nucleus | 42.27 | 46.04 |
| TraesCS3A01G239600.1 | Wheat | cytosol | 40.91 | 45.69 |
| TraesCS3B01G268100.1 | Wheat | cytosol, nucleus, plastid | 40.91 | 45.69 |
| TraesCS3D01G239900.1 | Wheat | cytosol, nucleus, plastid | 40.91 | 45.69 |
| TraesCS3A01G239500.1 | Wheat | nucleus | 41.36 | 45.5 |
| TraesCS3D01G239800.1 | Wheat | nucleus | 40.91 | 45.0 |
| HORVU7Hr1G071770.1 | Barley | cytosol | 43.18 | 44.81 |
| Os01t0660800-01 | Rice | nucleus | 40.45 | 44.72 |
| TraesCS5A01G007100.1 | Wheat | cytosol | 40.0 | 43.78 |
| Os01t0737600-00 | Rice | cytosol | 41.36 | 43.75 |
| TraesCS7A01G302600.1 | Wheat | cytosol | 41.36 | 43.54 |
| Zm00001d043985_P001 | Maize | cytosol, nucleus, plastid | 39.09 | 43.0 |
| EES01443 | Sorghum | cytosol | 39.55 | 42.86 |
| TraesCS7B01G202700.1 | Wheat | cytosol | 40.45 | 42.79 |
| Zm00001d043554_P001 | Maize | cytosol | 39.55 | 42.65 |
| EES03385 | Sorghum | cytosol, nucleus, plastid | 38.18 | 41.79 |
| TraesCS4A01G026000.1 | Wheat | cytosol | 35.91 | 41.36 |
| TraesCS6B01G430200.1 | Wheat | cytosol | 36.82 | 40.5 |
| TraesCS6A01G390200.1 | Wheat | nucleus | 36.36 | 40.4 |
| TraesCS3A01G278600.1 | Wheat | cytosol | 34.55 | 39.58 |
| TraesCS7D01G297900.1 | Wheat | cytosol | 33.64 | 39.57 |
| EES01441 | Sorghum | cytosol, nucleus, plastid | 37.73 | 39.52 |
| TraesCS2B01G625700.1 | Wheat | cytosol | 41.36 | 39.06 |
| TraesCS3B01G312800.1 | Wheat | nucleus | 36.82 | 38.94 |
| TraesCS3D01G278900.1 | Wheat | nucleus | 36.82 | 38.94 |
| PGSC0003DMT400087534 | Potato | cytosol, nucleus, plastid | 27.73 | 38.61 |
| EES01442 | Sorghum | nucleus | 36.36 | 38.46 |
| TraesCS2A01G565200.1 | Wheat | cytosol | 40.45 | 38.36 |
| HORVU0Hr1G006750.1 | Barley | nucleus | 35.0 | 38.12 |
| Os04t0225100-01 | Rice | cytosol | 36.36 | 37.91 |
| PGSC0003DMT400032474 | Potato | cytosol, nucleus, vacuole | 40.0 | 37.77 |
| KXG33324 | Sorghum | cytosol | 32.73 | 36.55 |
| Os01t0737700-00 | Rice | nucleus | 38.64 | 36.32 |
| EES03381 | Sorghum | nucleus | 37.27 | 36.28 |
| PGSC0003DMT400036459 | Potato | extracellular | 35.0 | 35.65 |
| PGSC0003DMT400016348 | Potato | nucleus | 33.64 | 35.41 |
| HORVU3Hr1G069990.1 | Barley | nucleus | 36.82 | 35.37 |
| PGSC0003DMT400032554 | Potato | cytosol | 39.55 | 34.52 |
| PGSC0003DMT400092627 | Potato | nucleus | 32.27 | 34.47 |
| GSMUA_Achr1P12990_001 | Banana | plastid | 29.55 | 34.21 |
| OQU87276 | Sorghum | nucleus | 35.0 | 34.07 |
| Os11t0222320-00 | Rice | cytosol, nucleus | 20.45 | 33.33 |
| TraesCS3D01G239600.1 | Wheat | cytosol | 33.18 | 30.93 |
| TraesCS3B01G267900.1 | Wheat | cytosol | 34.09 | 30.49 |
| Zm00001d047288_P001 | Maize | nucleus | 20.45 | 22.28 |
| Os01t0660500-00 | Rice | mitochondrion | 36.36 | 20.46 |
| Zm00001d011513_P001 | Maize | plastid | 39.55 | 19.95 |
| Zm00001d036734_P001 | Maize | nucleus | 24.09 | 19.7 |
| PGSC0003DMT400053073 | Potato | nucleus | 24.09 | 17.61 |
| Zm00001d022094_P001 | Maize | nucleus | 26.82 | 13.98 |
| Zm00001d010107_P001 | Maize | nucleus | 26.82 | 5.73 |
Protein Annotations
| EntrezGene:102580822 | InterPro:3'-5'_exonuclease_dom | Gene3D:3.30.420.10 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003824 | GO:GO:0004518 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008408 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0090305 | InterPro:IPR036397 | UniProt:M1CVH6 |
| PFAM:PF01612 | EnsemblPlantsGene:PGSC0003DMG400029410 | PGSC:PGSC0003DMG400029410 | EnsemblPlants:PGSC0003DMT400075613 | PANTHER:PTHR13620 | PANTHER:PTHR13620:SF34 |
| InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | SMART:SM00474 | SUPFAM:SSF53098 | UniParc:UPI000295078A | RefSeq:XP_006342546.1 |
| SEG:seg | : | : | : | : | : |
Description
3-5 exonuclease [Source:PGSC_GENE;Acc:PGSC0003DMG400029410]
Coordinates
chr12:+:57371515..57372753
Molecular Weight (calculated)
24843.6 Da
IEP (calculated)
4.960
GRAVY (calculated)
-0.187
Length
220 amino acids
Sequence
(BLAST)
(BLAST)
001: MNLRIVDKEE QDNRYDLFDV HFHSDVIKTM VTPDPDIITQ WISETESSHS GNRRLIAGLD VEWRPNFHRN QQNPVAVLQI CVDRRCLIIQ LLYCRSIPES
101: LFNFLGNREY DFVGIGIESD VEKLLEDYEL NVKNVVDLRG IAADVYGMKN LKNAGLKELC NVVLGKEIVK PKSVTMGRWD SEWLSLNQVQ YACLDAFVSS
201: EIARHLNVGA AAASASASGS
101: LFNFLGNREY DFVGIGIESD VEKLLEDYEL NVKNVVDLRG IAADVYGMKN LKNAGLKELC NVVLGKEIVK PKSVTMGRWD SEWLSLNQVQ YACLDAFVSS
201: EIARHLNVGA AAASASASGS
001: MAPTIRTIGS YATQQRYSVD FFGEELFVTV TPDPSVIGQW IHDVFFHNRL SSHPLVVGVG VQWTPSGYHP ASPPVSYRSD SSPDSYRSDS PPVFYSSDPP
101: ADTLQLCVGN RCIIIQLRYC ERVPQVLRNF LADRDNTFVG IWNSQDAGKL ERSRHQLEIA ELMDLREFVS DSSGRRSMYN YSLEKIVEEN LGYPGVRLDR
201: EVSMSDWRVY NLSYDQILQA SIDVYACCSL AILDHLWEEK NR
101: ADTLQLCVGN RCIIIQLRYC ERVPQVLRNF LADRDNTFVG IWNSQDAGKL ERSRHQLEIA ELMDLREFVS DSSGRRSMYN YSLEKIVEEN LGYPGVRLDR
201: EVSMSDWRVY NLSYDQILQA SIDVYACCSL AILDHLWEEK NR
Arabidopsis Description
Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LHG2]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.