Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- peroxisome 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES03384 | Sorghum | nucleus | 83.17 | 83.17 |
| Os01t0660800-01 | Rice | nucleus | 67.82 | 68.84 |
| TraesCS3B01G268100.1 | Wheat | cytosol, nucleus, plastid | 65.84 | 67.51 |
| TraesCS3A01G239600.1 | Wheat | cytosol | 65.84 | 67.51 |
| TraesCS3D01G239900.1 | Wheat | cytosol, nucleus, plastid | 65.35 | 67.01 |
| TraesCS4A01G026000.1 | Wheat | cytosol | 57.92 | 61.26 |
| TraesCS5A01G007100.1 | Wheat | cytosol | 59.9 | 60.2 |
| TraesCS7A01G302600.1 | Wheat | cytosol | 61.88 | 59.81 |
| Zm00001d043985_P001 | Maize | cytosol, nucleus, plastid | 58.91 | 59.5 |
| HORVU7Hr1G071770.1 | Barley | cytosol | 62.38 | 59.43 |
| TraesCS7B01G202700.1 | Wheat | cytosol | 60.89 | 59.13 |
| TraesCS7D01G297900.1 | Wheat | cytosol | 52.97 | 57.22 |
| HORVU0Hr1G006750.1 | Barley | nucleus | 56.44 | 56.44 |
| TraesCS2B01G625700.1 | Wheat | cytosol | 62.38 | 54.08 |
| TraesCS2A01G565200.1 | Wheat | cytosol | 60.89 | 53.02 |
| Zm00001d043554_P001 | Maize | cytosol | 50.0 | 49.51 |
| Solyc10g078200.1.1 | Tomato | nucleus | 48.51 | 47.8 |
| PGSC0003DMT400093830 | Potato | cytosol | 48.51 | 47.8 |
| VIT_08s0040g00710.t01 | Wine grape | cytosol | 48.51 | 47.12 |
| KRH49260 | Soybean | cytosol, nucleus, peroxisome | 47.03 | 44.81 |
| PGSC0003DMT400075613 | Potato | nucleus | 48.51 | 44.55 |
| KRH00115 | Soybean | nucleus | 46.53 | 44.13 |
| Solyc12g094540.1.1 | Tomato | cytosol | 44.06 | 43.63 |
| Solyc11g006480.1.1 | Tomato | nucleus | 37.62 | 42.94 |
| KRH00114 | Soybean | cytosol | 48.02 | 42.92 |
| Solyc08g078620.1.1 | Tomato | mitochondrion | 43.56 | 42.51 |
| PGSC0003DMT400094103 | Potato | mitochondrion | 44.55 | 42.25 |
| Solyc12g042390.1.1 | Tomato | cytosol | 44.55 | 41.47 |
| PGSC0003DMT400064032 | Potato | nucleus | 44.06 | 41.4 |
| Solyc01g103460.2.1 | Tomato | cytosol | 43.56 | 41.31 |
| KRH00116 | Soybean | cytosol | 42.57 | 40.76 |
| PGSC0003DMT400032474 | Potato | cytosol, nucleus, vacuole | 46.04 | 39.91 |
| Solyc08g007350.1.1 | Tomato | cytosol | 46.04 | 39.57 |
| PGSC0003DMT400036459 | Potato | extracellular | 40.59 | 37.96 |
| KRH49255 | Soybean | nucleus | 44.55 | 37.82 |
| PGSC0003DMT400032554 | Potato | cytosol | 46.53 | 37.3 |
| GSMUA_Achr1P12990_001 | Banana | plastid | 32.67 | 34.74 |
| Zm00001d009130_P001 | Maize | nucleus | 36.14 | 34.11 |
| KRH00112 | Soybean | nucleus | 31.68 | 32.0 |
| Zm00001d047288_P001 | Maize | nucleus | 29.21 | 29.21 |
| Zm00001d036734_P001 | Maize | nucleus | 35.64 | 26.77 |
| Zm00001d018645_P001 | Maize | mitochondrion | 32.67 | 24.35 |
| Zm00001d011513_P001 | Maize | plastid | 47.03 | 21.79 |
| Zm00001d004468_P003 | Maize | nucleus | 25.25 | 16.83 |
| Zm00001d022094_P001 | Maize | nucleus | 32.18 | 15.4 |
| Zm00001d010107_P001 | Maize | nucleus | 31.19 | 6.12 |
Protein Annotations
| EntrezGene:100273185 | InterPro:3'-5'_exonuclease_dom | Gene3D:3.30.420.10 | MapMan:35.1 | ProteinID:AQK97086.1 | UniProt:B4FTF6 |
| EMBL:BT040394 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004518 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008408 | GO:GO:0009987 | GO:GO:0016740 |
| GO:GO:0016787 | GO:GO:0090305 | InterPro:IPR036397 | PFAM:PF01612 | PANTHER:PTHR13620 | PANTHER:PTHR13620:SF34 |
| InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | SUPFAM:SSF53098 | UniParc:UPI00017B75FC | EnsemblPlantsGene:Zm00001d011507 | EnsemblPlants:Zm00001d011507_P001 |
| EnsemblPlants:Zm00001d011507_T001 | : | : | : | : | : |
Description
Polynucleotidyl transferase ribonuclease H-like superfamily protein
Coordinates
chr8:-:152823450..152824058
Molecular Weight (calculated)
22104.5 Da
IEP (calculated)
5.021
GRAVY (calculated)
0.099
Length
202 amino acids
Sequence
(BLAST)
(BLAST)
001: MADPDVIEVT FGNDVINTTV TSSGQAVERW IAEILALHRP GSNGYSIIVG LDVEWRPSFG PHQNPVATLQ LCVGHSCLIF QLLYADYVPG ALAEFLGDRG
101: IRFVGVGVEA DAERLSDDHG LVVANAEDLR GRAAERMNRP DLRQAGLRAL VQVVMGVNLV KPQRVTMSRW DASCLSYEQI KYACIDAFVS FEVARRLLGG
201: AY
101: IRFVGVGVEA DAERLSDDHG LVVANAEDLR GRAAERMNRP DLRQAGLRAL VQVVMGVNLV KPQRVTMSRW DASCLSYEQI KYACIDAFVS FEVARRLLGG
201: AY
001: MSSSNWIDDA FTEEELLAID AIEASYNFSR SSSSSSSAAP TVQATTSVHG HEEDPNQIPN NIRRQLPRSI TSSTSYKRFP LSRCRARNFP AMRFGGRILY
101: SKTATEVDKR AMQLIKVLDT KRDESGIAFV GLDIEWRPSF RKGVLPGKVA TVQICVDSNY CDVMHIFHSG IPQSLQHLIE DSTLVKVGIG IDGDSVKLFH
201: DYGVSIKDVE DLSDLANQKI GGDKKWGLAS LTETLVCKEL LKPNRIRLGN WEFYPLSKQQ LQYAATDAYA SWHLYKDLPD AVSGS
101: SKTATEVDKR AMQLIKVLDT KRDESGIAFV GLDIEWRPSF RKGVLPGKVA TVQICVDSNY CDVMHIFHSG IPQSLQHLIE DSTLVKVGIG IDGDSVKLFH
201: DYGVSIKDVE DLSDLANQKI GGDKKWGLAS LTETLVCKEL LKPNRIRLGN WEFYPLSKQQ LQYAATDAYA SWHLYKDLPD AVSGS
Arabidopsis Description
WEXWerner Syndrome-like exonuclease [Source:UniProtKB/Swiss-Prot;Acc:Q84LH3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.