Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g078200.1.1 | Tomato | nucleus | 83.9 | 83.9 |
| PGSC0003DMT400075613 | Potato | nucleus | 60.0 | 55.91 |
| Zm00001d043985_P001 | Maize | cytosol, nucleus, plastid | 49.27 | 50.5 |
| HORVU7Hr1G071770.1 | Barley | cytosol | 50.73 | 49.06 |
| TraesCS7A01G302600.1 | Wheat | cytosol | 49.76 | 48.8 |
| EES03385 | Sorghum | cytosol, nucleus, plastid | 47.8 | 48.76 |
| Os01t0737600-00 | Rice | cytosol | 49.27 | 48.56 |
| Zm00001d011507_P001 | Maize | cytosol | 47.8 | 48.51 |
| EES03384 | Sorghum | nucleus | 47.8 | 48.51 |
| PGSC0003DMT400094103 | Potato | mitochondrion | 50.24 | 48.36 |
| TraesCS3A01G278600.1 | Wheat | cytosol | 44.88 | 47.92 |
| PGSC0003DMT400064032 | Potato | nucleus | 50.24 | 47.91 |
| EES01442 | Sorghum | nucleus | 48.29 | 47.6 |
| TraesCS3D01G278900.1 | Wheat | nucleus | 48.29 | 47.6 |
| TraesCS3B01G312800.1 | Wheat | nucleus | 48.29 | 47.6 |
| TraesCS3A01G239600.1 | Wheat | cytosol | 45.37 | 47.21 |
| TraesCS3D01G239900.1 | Wheat | cytosol, nucleus, plastid | 45.37 | 47.21 |
| TraesCS3B01G268100.1 | Wheat | cytosol, nucleus, plastid | 45.37 | 47.21 |
| TraesCS7B01G202700.1 | Wheat | cytosol | 47.8 | 47.12 |
| TraesCS5A01G007100.1 | Wheat | cytosol | 45.85 | 46.77 |
| TraesCS4A01G026000.1 | Wheat | cytosol | 42.93 | 46.07 |
| TraesCS7D01G297900.1 | Wheat | cytosol | 41.95 | 45.99 |
| EES01443 | Sorghum | cytosol | 44.39 | 44.83 |
| Os01t0660800-01 | Rice | nucleus | 43.41 | 44.72 |
| TraesCS3A01G239500.1 | Wheat | nucleus | 43.41 | 44.5 |
| TraesCS3D01G239800.1 | Wheat | nucleus | 43.41 | 44.5 |
| Zm00001d043554_P001 | Maize | cytosol | 43.9 | 44.12 |
| KXG33324 | Sorghum | cytosol | 41.46 | 43.15 |
| PGSC0003DMT400032474 | Potato | cytosol, nucleus, vacuole | 48.78 | 42.92 |
| EES01441 | Sorghum | cytosol, nucleus, plastid | 43.9 | 42.86 |
| TraesCS2A01G565200.1 | Wheat | cytosol | 47.8 | 42.24 |
| HORVU3Hr1G069990.1 | Barley | nucleus | 46.83 | 41.92 |
| TraesCS6B01G430200.1 | Wheat | cytosol | 40.49 | 41.5 |
| Os04t0225100-01 | Rice | cytosol | 42.44 | 41.23 |
| Os01t0737700-00 | Rice | nucleus | 46.83 | 41.03 |
| TraesCS2B01G625700.1 | Wheat | cytosol | 45.85 | 40.34 |
| TraesCS6A01G390200.1 | Wheat | nucleus | 38.54 | 39.9 |
| PGSC0003DMT400087534 | Potato | cytosol, nucleus, plastid | 30.73 | 39.87 |
| HORVU0Hr1G006750.1 | Barley | nucleus | 38.54 | 39.11 |
| PGSC0003DMT400036459 | Potato | extracellular | 40.98 | 38.89 |
| PGSC0003DMT400032554 | Potato | cytosol | 46.83 | 38.1 |
| PGSC0003DMT400016348 | Potato | nucleus | 38.54 | 37.8 |
| EES03381 | Sorghum | nucleus | 40.0 | 36.28 |
| OQU87276 | Sorghum | nucleus | 40.0 | 36.28 |
| PGSC0003DMT400092627 | Potato | nucleus | 35.61 | 35.44 |
| Os11t0222320-00 | Rice | cytosol, nucleus | 22.93 | 34.81 |
| GSMUA_Achr1P12990_001 | Banana | plastid | 31.22 | 33.68 |
| TraesCS3D01G239600.1 | Wheat | cytosol | 37.56 | 32.63 |
| TraesCS3B01G267900.1 | Wheat | cytosol | 39.02 | 32.52 |
| Zm00001d047288_P001 | Maize | nucleus | 23.41 | 23.76 |
| Os01t0660500-00 | Rice | mitochondrion | 41.95 | 21.99 |
| Zm00001d036734_P001 | Maize | nucleus | 28.78 | 21.93 |
| Zm00001d011513_P001 | Maize | plastid | 43.41 | 20.41 |
| PGSC0003DMT400053073 | Potato | nucleus | 26.83 | 18.27 |
| Zm00001d022094_P001 | Maize | nucleus | 30.73 | 14.93 |
| Zm00001d010107_P001 | Maize | nucleus | 29.76 | 5.93 |
Protein Annotations
| EntrezGene:102585137 | InterPro:3'-5'_exonuclease_dom | Gene3D:3.30.420.10 | MapMan:35.1 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004518 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008408 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0090305 | InterPro:IPR036397 |
| UniProt:M1DST3 | PFAM:PF01612 | EnsemblPlantsGene:PGSC0003DMG400043401 | PGSC:PGSC0003DMG400043401 | EnsemblPlants:PGSC0003DMT400093830 | PANTHER:PTHR13620 |
| PANTHER:PTHR13620:SF34 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | SMART:SM00474 | SUPFAM:SSF53098 | UniParc:UPI0002966D23 |
| RefSeq:XP_006364799.1 | : | : | : | : | : |
Description
3-5 exonuclease [Source:PGSC_GENE;Acc:PGSC0003DMG400043401]
Coordinates
chr10:-:59502873..59503490
Molecular Weight (calculated)
24051.7 Da
IEP (calculated)
4.521
GRAVY (calculated)
-0.136
Length
205 amino acids
Sequence
(BLAST)
(BLAST)
001: MAFPIEVEDD RYQLYDVFFF SDQILTTVTC NPDVVTNWIN GIEYVHRRRL NRLIVGLDIE WRPTFNRYQH NHPVATLQLC VGRRCLIFQL LYCEYIPDSL
101: TEFLLNPCYA FVGVGIANDV EKLEEDYMLR VENTVDLRDL ADYNLRNAGL KTLCQVVLGR EMEKPRHVTI GRWDNEWLDS DQVQYACVDA FVSFEIGRCM
201: NATAY
101: TEFLLNPCYA FVGVGIANDV EKLEEDYMLR VENTVDLRDL ADYNLRNAGL KTLCQVVLGR EMEKPRHVTI GRWDNEWLDS DQVQYACVDA FVSFEIGRCM
201: NATAY
001: MARIRRRIQK RHIHENRYID FFGERLIVTV THTTSTIRRW IHSIRFFSRL RSSHPLVVGL DVQWTPGGSD PPPDILQLCV GNRCLIIQLS HCKRIPEVLR
101: SFLEDETITF VGVWNSQDQG KLERFRHQLE IWRLLDIRHY LPTRLLNSSF EKIVEECLGY KGVRKDKEIC MSNWGARSLS HDQIVQASDD VYVCCKLGVK
201: ECIWKERSNV KERIWKESSN VKEHIWKESS KLYFVGVCF
101: SFLEDETITF VGVWNSQDQG KLERFRHQLE IWRLLDIRHY LPTRLLNSSF EKIVEECLGY KGVRKDKEIC MSNWGARSLS HDQIVQASDD VYVCCKLGVK
201: ECIWKERSNV KERIWKESSN VKEHIWKESS KLYFVGVCF
Arabidopsis Description
Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SIH3]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.