Factsheet for PGSC0003DMT400053073

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g092340.2.1	Tomato	nucleus	92.03	92.33
KRG97350	Soybean	nucleus	49.17	50.68
KRH31568	Soybean	mitochondrion	33.89	50.25
HORVU2Hr1G001690.1	Barley	plastid	38.21	49.36
CDY01171	Canola	nucleus	44.19	48.36
Bra032748.1-P	Field mustard	nucleus	44.19	48.01
CDY50420	Canola	nucleus	43.52	47.64
VIT_05s0029g00410.t01	Wine grape	nucleus	45.51	45.51
AT4G13870.2	Thale cress	nucleus	42.52	44.44
Os04t0129200-00	Rice	nucleus	43.85	44.3
TraesCS2B01G010000.1	Wheat	nucleus	43.19	44.07
TraesCS2A01G011600.1	Wheat	nucleus	43.19	43.92
Zm00001d004468_P003	Maize	nucleus	44.19	43.89
TraesCS2D01G012000.1	Wheat	nucleus	43.19	43.62
EES11779	Sorghum	nucleus	43.19	41.8
GSMUA_AchrUn_...	Banana	nucleus	38.21	40.07
PGSC0003DMT400087534	Potato	cytosol, nucleus, plastid	14.95	28.48
PGSC0003DMT400093830	Potato	cytosol	18.27	26.83
PGSC0003DMT400094103	Potato	mitochondrion	18.94	26.76
PGSC0003DMT400092627	Potato	nucleus	17.94	26.21
AT4G13885.1	Thale cress	nucleus	22.26	25.48
PGSC0003DMT400064032	Potato	nucleus	17.94	25.12
PGSC0003DMT400075613	Potato	nucleus	17.61	24.09
PGSC0003DMT400036459	Potato	extracellular	17.28	24.07
PGSC0003DMT400016348	Potato	nucleus	16.61	23.92
PGSC0003DMT400032474	Potato	cytosol, nucleus, vacuole	17.94	23.18
PGSC0003DMT400032554	Potato	cytosol	18.27	21.83

Protein Annotations

EntrezGene:102602785	InterPro:3'-5'_exonuclease_dom	Gene3D:3.30.420.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0004518	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0008408	GO:GO:0009987	GO:GO:0016787	GO:GO:0090305	InterPro:IPR036397	UniProt:M1BUC3
PFAM:PF01612	EnsemblPlantsGene:PGSC0003DMG400020590	PGSC:PGSC0003DMG400020590	EnsemblPlants:PGSC0003DMT400053073	PANTHER:PTHR13620	PANTHER:PTHR13620:SF19
InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	SMART:SM00474	SUPFAM:SSF53098	UniParc:UPI000295D3B0	RefSeq:XP_006360927.1
SEG:seg	:	:	:	:	:

Description

Werner syndrome ATP-dependent helicase [Source:PGSC_GENE;Acc:PGSC0003DMG400020590]

Coordinates

chr9:-:59597988..59602377

Molecular Weight (calculated)

34034.2 Da

IEP (calculated)

6.788

GRAVY (calculated)

-0.611

Length

301 amino acids

Sequence
(BLAST)

001: MGTPISGEFD DWDRPFTEEE LQEIDAAFQS ATKRRNDSED VAAAGEESRR KSRRRLPESL FVYHQQNEAS NSSLLSPCSR NRSRCSYSYP SSNQAKLVMQ
101: YPEMSFEGQV IYSRTIKEVE KSAVELLNFV EEKKRKEGNV ALGFDIEWKP SFRRGVPPGK AAVMQICGDK GNCYVLHIIH SGIPQTLQSL LEDPTVVKVG
201: VCIANDGYKV RQDHNVSVKA LEDLSELANK KLDDPKKWSL ASLTEKLLAK QLPKPSNIRL GNWEANVLSR DQLHYAATDA FVSWHLYQAL KSLPEIVDNK
301: E

Best Arabidopsis Sequence Match ( AT4G13870.2 )
(BLAST)

001: MSSSNWIDDA FTEEELLAID AIEASYNFSR SSSSSSSAAP TVQATTSVHG HEEDPNQIPN NIRRQLPRSI TSSTSYKRFP LSRCRARNFP AMRFGGRILY
101: SKTATEVDKR AMQLIKVLDT KRDESGIAFV GLDIEWRPSF RKGVLPGKVA TVQICVDSNY CDVMHIFHSG IPQSLQHLIE DSTLVKVGIG IDGDSVKLFH
201: DYGVSIKDVE DLSDLANQKI GGDKKWGLAS LTETLVCKEL LKPNRIRLGN WEFYPLSKQQ LQYAATDAYA SWHLYKVLKD LPDAVSGS

Arabidopsis Description

WEXWerner Syndrome-like exonuclease [Source:UniProtKB/Swiss-Prot;Acc:Q84LH3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.