Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400032474 | Potato | cytosol, nucleus, vacuole | 77.78 | 84.12 |
| Solyc08g007350.1.1 | Tomato | cytosol | 78.17 | 83.83 |
| PGSC0003DMT400036459 | Potato | extracellular | 68.25 | 79.63 |
| TraesCS3A01G239600.1 | Wheat | cytosol | 36.9 | 47.21 |
| TraesCS3B01G268100.1 | Wheat | cytosol, nucleus, plastid | 36.9 | 47.21 |
| TraesCS3D01G239900.1 | Wheat | cytosol, nucleus, plastid | 36.9 | 47.21 |
| Zm00001d043985_P001 | Maize | cytosol, nucleus, plastid | 37.3 | 47.0 |
| PGSC0003DMT400093830 | Potato | cytosol | 38.1 | 46.83 |
| Zm00001d011507_P001 | Maize | cytosol | 37.3 | 46.53 |
| TraesCS5A01G007100.1 | Wheat | cytosol | 36.51 | 45.77 |
| TraesCS4A01G026000.1 | Wheat | cytosol | 34.52 | 45.55 |
| EES03384 | Sorghum | nucleus | 36.51 | 45.54 |
| HORVU7Hr1G071770.1 | Barley | cytosol | 38.1 | 45.28 |
| EES03385 | Sorghum | cytosol, nucleus, plastid | 36.11 | 45.27 |
| Os01t0660800-01 | Rice | nucleus | 34.92 | 44.22 |
| TraesCS7A01G302600.1 | Wheat | cytosol | 36.51 | 44.02 |
| TraesCS7B01G202700.1 | Wheat | cytosol | 36.11 | 43.75 |
| TraesCS3A01G278600.1 | Wheat | cytosol | 33.33 | 43.75 |
| TraesCS7D01G297900.1 | Wheat | cytosol | 31.75 | 42.78 |
| TraesCS3D01G278900.1 | Wheat | nucleus | 34.92 | 42.31 |
| TraesCS3B01G312800.1 | Wheat | nucleus | 34.92 | 42.31 |
| EES01442 | Sorghum | nucleus | 34.92 | 42.31 |
| Os01t0737600-00 | Rice | cytosol | 34.52 | 41.83 |
| TraesCS3D01G239800.1 | Wheat | nucleus | 32.54 | 41.0 |
| TraesCS3A01G239500.1 | Wheat | nucleus | 32.54 | 41.0 |
| EES01441 | Sorghum | cytosol, nucleus, plastid | 34.13 | 40.95 |
| HORVU0Hr1G006750.1 | Barley | nucleus | 32.14 | 40.1 |
| EES01443 | Sorghum | cytosol | 32.14 | 39.9 |
| Zm00001d043554_P001 | Maize | cytosol | 32.14 | 39.71 |
| TraesCS2A01G565200.1 | Wheat | cytosol | 36.51 | 39.66 |
| PGSC0003DMT400075613 | Potato | nucleus | 34.52 | 39.55 |
| TraesCS2B01G625700.1 | Wheat | cytosol | 36.51 | 39.48 |
| Os04t0225100-01 | Rice | cytosol | 32.94 | 39.34 |
| HORVU3Hr1G069990.1 | Barley | nucleus | 35.71 | 39.3 |
| PGSC0003DMT400087534 | Potato | cytosol, nucleus, plastid | 24.6 | 39.24 |
| KXG33324 | Sorghum | cytosol | 30.16 | 38.58 |
| PGSC0003DMT400094103 | Potato | mitochondrion | 32.54 | 38.5 |
| PGSC0003DMT400064032 | Potato | nucleus | 32.54 | 38.14 |
| GSMUA_Achr1P12990_001 | Banana | plastid | 28.17 | 37.37 |
| TraesCS6B01G430200.1 | Wheat | cytosol | 29.37 | 37.0 |
| TraesCS6A01G390200.1 | Wheat | nucleus | 28.57 | 36.36 |
| PGSC0003DMT400092627 | Potato | nucleus | 29.37 | 35.92 |
| OQU87276 | Sorghum | nucleus | 32.14 | 35.84 |
| Os11t0222320-00 | Rice | cytosol, nucleus | 19.05 | 35.56 |
| Os01t0737700-00 | Rice | nucleus | 32.94 | 35.47 |
| TraesCS3D01G239600.1 | Wheat | cytosol | 32.54 | 34.75 |
| TraesCS3B01G267900.1 | Wheat | cytosol | 32.94 | 33.74 |
| PGSC0003DMT400016348 | Potato | nucleus | 27.78 | 33.49 |
| EES03381 | Sorghum | nucleus | 28.17 | 31.42 |
| Zm00001d047288_P001 | Maize | nucleus | 19.44 | 24.26 |
| Zm00001d036734_P001 | Maize | nucleus | 23.41 | 21.93 |
| Os01t0660500-00 | Rice | mitochondrion | 32.94 | 21.23 |
| Zm00001d011513_P001 | Maize | plastid | 32.14 | 18.58 |
| PGSC0003DMT400053073 | Potato | nucleus | 21.83 | 18.27 |
| Zm00001d022094_P001 | Maize | nucleus | 23.02 | 13.74 |
| Zm00001d010107_P001 | Maize | nucleus | 25.4 | 6.22 |
Protein Annotations
| EntrezGene:102590346 | InterPro:3'-5'_exonuclease_dom | Gene3D:3.30.420.10 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003824 | GO:GO:0004518 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008408 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0090305 | InterPro:IPR036397 | UniProt:M1AXM1 |
| PFAM:PF01612 | EnsemblPlantsGene:PGSC0003DMG400012504 | PGSC:PGSC0003DMG400012504 | EnsemblPlants:PGSC0003DMT400032554 | PANTHER:PTHR13620 | PANTHER:PTHR13620:SF34 |
| InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | SMART:SM00474 | SUPFAM:SSF53098 | UniParc:UPI000296105C | RefSeq:XP_006358400.1 |
| SEG:seg | : | : | : | : | : |
Description
3-5 exonuclease/ nucleic acid binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400012504]
Coordinates
chr8:+:556140..556898
Molecular Weight (calculated)
29142.9 Da
IEP (calculated)
8.129
GRAVY (calculated)
-0.009
Length
252 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKIYGVEFY GDEIQVIVTN TAVVVNDWIL ETVHLHRRRL HKLLVGLDIE WLPCFKPEEN HPVALLQLCV GRRCLLFQLL HRDGLPAFLA NFLGDPNVKF
101: VGVGVKGDAE KLLRDHNLFV ANTVDLNLLA LSIYGEQVYG KMGLKRMAKE VLGKVMEKPK NVTLSKWDAE ELVYEQIEYA AIDAFMSFEI AKNLFNLVWK
201: RERESCPHPR VVMRQYLNCH YQQPLLLLQD RYSRNVSYTC SVLSLKLIPE RM
101: VGVGVKGDAE KLLRDHNLFV ANTVDLNLLA LSIYGEQVYG KMGLKRMAKE VLGKVMEKPK NVTLSKWDAE ELVYEQIEYA AIDAFMSFEI AKNLFNLVWK
201: RERESCPHPR VVMRQYLNCH YQQPLLLLQD RYSRNVSYTC SVLSLKLIPE RM
001: MASPTIRTVA SYNTHLEYSV DFFGDEFIVT VTWDSSVISR WIRNVLFNNR FSSHPLVVGV GVQWTPFSYY SDPRPNNYYA DPPPIRYYSD NPADILQLCV
101: GNRCLIIQLG YCDQVPNNLR SFLADPETTF VGVWNGQDAG KLARCCHQLE IGELLDIRRY VTDSWGRSMR RSSFEEIVEE CMGYQGVMLD PEISMSDWTA
201: YDLDLDQILQ ASLDAYVCHQ LGVWTRLWEV
101: GNRCLIIQLG YCDQVPNNLR SFLADPETTF VGVWNGQDAG KLARCCHQLE IGELLDIRRY VTDSWGRSMR RSSFEEIVEE CMGYQGVMLD PEISMSDWTA
201: YDLDLDQILQ ASLDAYVCHQ LGVWTRLWEV
Arabidopsis Description
Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LHG7]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.