Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES03381 | Sorghum | nucleus | 63.27 | 63.27 |
| TraesCS3D01G239600.1 | Wheat | cytosol | 50.44 | 48.31 |
| EES03384 | Sorghum | nucleus | 42.92 | 48.02 |
| TraesCS3B01G267900.1 | Wheat | cytosol | 50.44 | 46.34 |
| EES01442 | Sorghum | nucleus | 42.04 | 45.67 |
| EES01443 | Sorghum | cytosol | 40.71 | 45.32 |
| EES03385 | Sorghum | cytosol, nucleus, plastid | 39.38 | 44.28 |
| KXG33324 | Sorghum | cytosol | 38.5 | 44.16 |
| EES01441 | Sorghum | cytosol, nucleus, plastid | 40.71 | 43.81 |
| Os11t0222320-00 | Rice | cytosol, nucleus | 26.11 | 43.7 |
| TraesCS6A01G390200.1 | Wheat | nucleus | 38.05 | 43.43 |
| Solyc11g006480.1.1 | Tomato | nucleus | 33.19 | 42.37 |
| VIT_08s0040g00710.t01 | Wine grape | cytosol | 38.94 | 42.31 |
| KRH00116 | Soybean | cytosol | 38.94 | 41.71 |
| KRH00115 | Soybean | nucleus | 38.94 | 41.31 |
| KRH49260 | Soybean | cytosol, nucleus, peroxisome | 38.05 | 40.57 |
| PGSC0003DMT400093830 | Potato | cytosol | 36.28 | 40.0 |
| PGSC0003DMT400094103 | Potato | mitochondrion | 37.61 | 39.91 |
| Solyc08g078620.1.1 | Tomato | mitochondrion | 36.28 | 39.61 |
| Solyc10g078200.1.1 | Tomato | nucleus | 35.84 | 39.51 |
| Solyc01g103460.2.1 | Tomato | cytosol | 37.17 | 39.44 |
| PGSC0003DMT400064032 | Potato | nucleus | 36.73 | 38.6 |
| KRH00114 | Soybean | cytosol | 38.5 | 38.5 |
| PGSC0003DMT400032474 | Potato | cytosol, nucleus, vacuole | 38.5 | 37.34 |
| KXG32361 | Sorghum | mitochondrion | 35.84 | 36.99 |
| PGSC0003DMT400036459 | Potato | extracellular | 34.96 | 36.57 |
| Solyc08g007350.1.1 | Tomato | cytosol | 37.17 | 35.74 |
| KRH49255 | Soybean | nucleus | 37.61 | 35.71 |
| PGSC0003DMT400075613 | Potato | nucleus | 34.07 | 35.0 |
| Solyc12g042390.1.1 | Tomato | cytosol | 33.19 | 34.56 |
| Solyc12g094540.1.1 | Tomato | cytosol | 30.53 | 33.82 |
| Zm00001d011513_P001 | Maize | plastid | 62.83 | 32.57 |
| PGSC0003DMT400032554 | Potato | cytosol | 35.84 | 32.14 |
| KRH00112 | Soybean | nucleus | 27.88 | 31.5 |
| GSMUA_Achr1P12990_001 | Banana | plastid | 25.66 | 30.53 |
| Os01t0660500-00 | Rice | mitochondrion | 45.13 | 26.09 |
| EES02313 | Sorghum | mitochondrion, plastid | 23.89 | 22.31 |
| OQU88309 | Sorghum | mitochondrion | 21.68 | 20.08 |
| EES11779 | Sorghum | nucleus | 23.45 | 17.04 |
| EER95744 | Sorghum | nucleus | 26.99 | 12.53 |
Protein Annotations
| InterPro:3'-5'_exonuclease_dom | Gene3D:3.30.420.10 | MapMan:35.2 | UniProt:A0A1W0VYR7 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003824 | GO:GO:0004518 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008408 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0090305 | InterPro:IPR036397 | EnsemblPlants:OQU87276 |
| ProteinID:OQU87276 | ProteinID:OQU87276.1 | PFAM:PF01612 | PANTHER:PTHR13620 | PANTHER:PTHR13620:SF32 | InterPro:RNaseH-like_sf |
| InterPro:RNaseH_sf | SMART:SM00474 | EnsemblPlantsGene:SORBI_3003G246500 | SUPFAM:SSF53098 | UniParc:UPI0009DC9203 | SEG:seg |
Description
hypothetical protein
Coordinates
chr3:+:58530666..58531346
Molecular Weight (calculated)
24891.1 Da
IEP (calculated)
7.165
GRAVY (calculated)
0.019
Length
226 amino acids
Sequence
(BLAST)
(BLAST)
001: MPVDDGTTAV VIHTTVTNSG DAVKSFLREI RRTTGAGGKN EPPLIVGLDT EWRVVVSHDD GYRDNRMAVL QLCVGHRCLV FQTVHADYVP AALRAFLANP
101: DHRFVGVSVD GDVERLYCDC KILVATPVDL RHVAAEVLSR PELRRAGLKA LVREVMGVVM EKPKHVTMSR WSRRPLSPEQ VRYAAIDAFV SYEVGRLLLT
201: SQRALELEDA AGAAGTISPF VCFELP
101: DHRFVGVSVD GDVERLYCDC KILVATPVDL RHVAAEVLSR PELRRAGLKA LVREVMGVVM EKPKHVTMSR WSRRPLSPEQ VRYAAIDAFV SYEVGRLLLT
201: SQRALELEDA AGAAGTISPF VCFELP
001: MASPTIRTVA SYNTHLEYSV DFFGDEFIVT VTWDSSVISR WIRNVLFNNR FSSHPLVVGV GVQWTPFSYY SDPRPNNYYA DPPPIRYYSD NPADILQLCV
101: GNRCLIIQLG YCDQVPNNLR SFLADPETTF VGVWNGQDAG KLARCCHQLE IGELLDIRRY VTDSWGRSMR RSSFEEIVEE CMGYQGVMLD PEISMSDWTA
201: YDLDLDQILQ ASLDAYVCHQ LGVWTRLWEV
101: GNRCLIIQLG YCDQVPNNLR SFLADPETTF VGVWNGQDAG KLARCCHQLE IGELLDIRRY VTDSWGRSMR RSSFEEIVEE CMGYQGVMLD PEISMSDWTA
201: YDLDLDQILQ ASLDAYVCHQ LGVWTRLWEV
Arabidopsis Description
Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LHG7]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.