CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d009130_P001	Maize	nucleus	82.65	84.58
TraesCS3D01G118000.1	Wheat	nucleus, peroxisome, plastid	65.75	72.0
TraesCS3B01G135200.1	Wheat	nucleus, peroxisome, plastid	64.84	71.0
Os01t0300000-01	Rice	nucleus	63.01	68.66
TraesCS3A01G116100.1	Wheat	mitochondrion, nucleus, plastid	63.01	68.66
HORVU3Hr1G021110.1	Barley	nucleus	52.97	58.88
HORVU7Hr1G098080.1	Barley	nucleus	52.97	58.88
Os01t0299700-01	Rice	cytosol, peroxisome	53.42	49.37
PGSC0003DMT400087534	Potato	cytosol, nucleus, plastid	33.33	46.2
VIT_14s0060g01000.t01	Wine grape	nucleus	32.88	46.15
Solyc01g100680.1.1	Tomato	plastid	41.1	44.55
VIT_14s0060g00990.t01	Wine grape	nucleus	42.01	43.81
Solyc01g100670.1.1	Tomato	cytosol	32.42	43.29
PGSC0003DMT400092627	Potato	nucleus	40.64	43.2
PGSC0003DMT400016348	Potato	nucleus	41.1	43.06
Solyc04g076930.1.1	Tomato	cytosol, nucleus, plastid	25.11	42.31
EES03385	Sorghum	cytosol, nucleus, plastid	36.53	39.8
EES03384	Sorghum	nucleus	35.62	38.61
EES01443	Sorghum	cytosol	35.16	37.93
KRH26003	Soybean	nucleus	35.62	37.5
EES01442	Sorghum	nucleus	34.25	36.06
OQU87276	Sorghum	nucleus	36.99	35.84
EES01441	Sorghum	cytosol, nucleus, plastid	34.25	35.71
EES03381	Sorghum	nucleus	35.16	34.07
KXG33324	Sorghum	cytosol	30.59	34.01
KRH63674	Soybean	cytosol	23.74	31.52
EES02313	Sorghum	mitochondrion, plastid	26.48	23.97
OQU88309	Sorghum	mitochondrion	22.83	20.49
EES11779	Sorghum	nucleus	24.2	17.04
EER95744	Sorghum	nucleus	30.59	13.76

Protein Annotations

InterPro:3'-5'_exonuclease_dom	Gene3D:3.30.420.10	MapMan:35.1	UniProt:A0A1B6Q357	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0004518	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0008408	GO:GO:0009987	GO:GO:0016787	GO:GO:0090305	InterPro:IPR036397	EnsemblPlants:KXG32361
ProteinID:KXG32361	ProteinID:KXG32361.1	PFAM:PF01612	PANTHER:PTHR13620	PANTHER:PTHR13620:SF34	InterPro:RNaseH-like_sf
InterPro:RNaseH_sf	SMART:SM00474	EnsemblPlantsGene:SORBI_3003G143300	SUPFAM:SSF53098	UniParc:UPI00081ACCB7	:

Description

hypothetical protein

Coordinates

chr3:-:14218354..14220067

Molecular Weight (calculated)

24295.1 Da

IEP (calculated)

7.745

GRAVY (calculated)

-0.137

Length

219 amino acids

Sequence
(BLAST)

001: MFGGRSNSSA TTRLTVHFGS AMIDTTVTRD AAVADDWVRT VRAANPRGAR LIVGLDCEWK PNYRSWTTSK VAILQLCAGT RCLVLQLLYV DRVPASVRSF
101: LADPDVLFVG IGVGEDVAKL DADYGLTCAA HVDLESRCND YLGRYTGVGR RLGLKGYAEE VLGLFMEKPR GVTMSNWEKH DLEEAQIRYA CIDAYVSYKL
201: GEKRMGYCVA LKWEEGRHG

Best Arabidopsis Sequence Match ( AT3G12410.1 )
(BLAST)

001: MASPTIRTVA SYNTHLEYSV DFFGDEFIVT VTWDSSVISR WIRNVLFNNR FSSHPLVVGV GVQWTPFSYY SDPRPNNYYA DPPPIRYYSD NPADILQLCV
101: GNRCLIIQLG YCDQVPNNLR SFLADPETTF VGVWNGQDAG KLARCCHQLE IGELLDIRRY VTDSWGRSMR RSSFEEIVEE CMGYQGVMLD PEISMSDWTA
201: YDLDLDQILQ ASLDAYVCHQ LGVWTRLWEV

Arabidopsis Description

Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LHG7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.