Factsheet for TraesCS3D01G118000.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, nucleus

Predictor Summary:

peroxisome 1
mitochondrion 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, peroxisome, plastid
Any Predictor:	mitochondrion, nucleus, peroxisome, plastid
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G135200.1	Wheat	nucleus, peroxisome, plastid	97.5	97.5
TraesCS3A01G116100.1	Wheat	mitochondrion, nucleus, plastid	94.0	93.53
HORVU7Hr1G098080.1	Barley	nucleus	77.0	78.17
HORVU3Hr1G021110.1	Barley	nucleus	77.0	78.17
Os01t0300000-01	Rice	nucleus	75.0	74.63
Zm00001d009130_P001	Maize	nucleus	72.5	67.76
KXG32361	Sorghum	mitochondrion	72.0	65.75
Os01t0299700-01	Rice	cytosol, peroxisome	60.0	50.63
PGSC0003DMT400087534	Potato	cytosol, nucleus, plastid	36.5	46.2
VIT_14s0060g01000.t01	Wine grape	nucleus	34.0	43.59
Solyc01g100670.1.1	Tomato	cytosol	35.5	43.29
PGSC0003DMT400092627	Potato	nucleus	43.5	42.23
TraesCS3D01G239900.1	Wheat	cytosol, nucleus, plastid	40.5	41.12
Solyc01g100680.1.1	Tomato	plastid	40.5	40.1
VIT_14s0060g00990.t01	Wine grape	nucleus	42.0	40.0
TraesCS3D01G239800.1	Wheat	nucleus	40.0	40.0
PGSC0003DMT400016348	Potato	nucleus	41.5	39.71
TraesCS7D01G297900.1	Wheat	cytosol	35.5	37.97
Solyc04g076930.1.1	Tomato	cytosol, nucleus, plastid	23.5	36.15
TraesCS3D01G278900.1	Wheat	nucleus	37.5	36.06
KRH26003	Soybean	nucleus	36.0	34.62
TraesCS3D01G239600.1	Wheat	cytosol	37.5	31.78
TraesCS1D01G315900.1	Wheat	mitochondrion	31.0	31.16
KRH63674	Soybean	cytosol	23.5	28.48
TraesCS2D01G012000.1	Wheat	nucleus	28.0	18.79
TraesCS2D01G261700.1	Wheat	cytosol, mitochondrion, nucleus	29.0	10.09

Protein Annotations

InterPro:3'-5'_exonuclease_dom	Gene3D:3.30.420.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824
GO:GO:0004518	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008408
GO:GO:0009987	GO:GO:0016787	InterPro:IPR036397	PFAM:PF01612	PANTHER:PTHR13620	PANTHER:PTHR13620:SF34
InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	SUPFAM:SSF53098	EnsemblPlantsGene:TraesCS3D01G118000	EnsemblPlants:TraesCS3D01G118000.1	TIGR:cd06141
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3D:+:71529454..71530056

Molecular Weight (calculated)

21856.4 Da

IEP (calculated)

8.029

GRAVY (calculated)

-0.061

Length

200 amino acids

Sequence
(BLAST)

001: MATTRHTVPF GSALINTTVT SDTNAADEWV RRVRAANDPA GRGLIVGLDC EWKPNYSSWT TSKVAILQLC VGTSCLVLQM FYANRVPAAI RSLLGDPAVR
101: CVGIGVGEDA AKLADDYGLV CAAPVDLEGR CNEYLGIGGL GRRRLGLKGY AREVLGMTME KPRHVTMSNW ERRQLEVAQV QYACIDAYVS YKLGERLLDN

Best Arabidopsis Sequence Match ( AT3G12410.1 )
(BLAST)

001: MASPTIRTVA SYNTHLEYSV DFFGDEFIVT VTWDSSVISR WIRNVLFNNR FSSHPLVVGV GVQWTPFSYY SDPRPNNYYA DPPPIRYYSD NPADILQLCV
101: GNRCLIIQLG YCDQVPNNLR SFLADPETTF VGVWNGQDAG KLARCCHQLE IGELLDIRRY VTDSWGRSMR RSSFEEIVEE CMGYQGVMLD PEISMSDWTA
201: YDLDLDQILQ ASLDAYVCHQ LGVWTRLWEV

Arabidopsis Description

Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LHG7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.