Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_14s0060g01000.t01 | Wine grape | nucleus | 63.81 | 85.9 |
| PGSC0003DMT400016348 | Potato | nucleus | 75.71 | 76.08 |
| Solyc04g076930.1.1 | Tomato | cytosol, nucleus, plastid | 45.24 | 73.08 |
| KRH26003 | Soybean | nucleus | 49.52 | 50.0 |
| KRH63674 | Soybean | cytosol | 37.62 | 47.88 |
| Zm00001d009130_P001 | Maize | nucleus | 45.24 | 44.39 |
| Os01t0300000-01 | Rice | nucleus | 40.95 | 42.79 |
| KXG32361 | Sorghum | mitochondrion | 43.81 | 42.01 |
| TraesCS3B01G135200.1 | Wheat | nucleus, peroxisome, plastid | 40.0 | 42.0 |
| TraesCS3D01G118000.1 | Wheat | nucleus, peroxisome, plastid | 40.0 | 42.0 |
| TraesCS3A01G116100.1 | Wheat | mitochondrion, nucleus, plastid | 38.57 | 40.3 |
| VIT_08s0040g00710.t01 | Wine grape | cytosol | 37.14 | 37.5 |
| HORVU3Hr1G021110.1 | Barley | nucleus | 31.9 | 34.01 |
| HORVU7Hr1G098080.1 | Barley | nucleus | 31.9 | 34.01 |
| Os01t0299700-01 | Rice | cytosol, peroxisome | 35.71 | 31.65 |
| VIT_05s0029g00410.t01 | Wine grape | nucleus | 20.95 | 14.62 |
Protein Annotations
| EntrezGene:100258017 | wikigene:100258017 | InterPro:3'-5'_exonuclease_dom | Gene3D:3.30.420.10 | MapMan:35.1 | ProteinID:CCB61924 |
| ProteinID:CCB61924.1 | UniProt:F6I4T7 | EMBL:FN596746 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 |
| GO:GO:0004518 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005737 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008408 | GO:GO:0009987 |
| GO:GO:0016787 | GO:GO:0090305 | InterPro:IPR036397 | EntrezGene:LOC100258017 | wikigene:LOC100258017 | PFAM:PF01612 |
| PANTHER:PTHR13620 | PANTHER:PTHR13620:SF34 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | SMART:SM00474 | SUPFAM:SSF53098 |
| UniParc:UPI0001984AEE | ArrayExpress:VIT_14s0060g00990 | EnsemblPlantsGene:VIT_14s0060g00990 | EnsemblPlants:VIT_14s0060g00990.t01 | unigene:Vvi.22058 | RefSeq:XP_002277523 |
| RefSeq:XP_002277523.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr14:-:752404..753242
Molecular Weight (calculated)
23819.8 Da
IEP (calculated)
6.923
GRAVY (calculated)
-0.179
Length
210 amino acids
Sequence
(BLAST)
(BLAST)
001: MFGFITNPSS ITFNPTTSKY SVILAGKTIE TTLTDKAAIA DEWVREILSI HAGKPMVVGL DIEWRPHPIR SMSNKSATLQ LCIDDKCLIL QLFYMDEIPE
101: SLKSFLADSN FTFVGIEVGD DIAKLKNEYG LDCSRSADIR DLAMQRWPGR FRRPGLKDLA WEVTNLPMKK PKHVSMSNWE ARVLSENQIE YACIDAYASY
201: KIGHKLIIEK
101: SLKSFLADSN FTFVGIEVGD DIAKLKNEYG LDCSRSADIR DLAMQRWPGR FRRPGLKDLA WEVTNLPMKK PKHVSMSNWE ARVLSENQIE YACIDAYASY
201: KIGHKLIIEK
001: MASPTIRTVA SYNTHLEYSV DFFGDEFIVT VTWDSSVISR WIRNVLFNNR FSSHPLVVGV GVQWTPFSYY SDPRPNNYYA DPPPIRYYSD NPADILQLCV
101: GNRCLIIQLG YCDQVPNNLR SFLADPETTF VGVWNGQDAG KLARCCHQLE IGELLDIRRY VTDSWGRSMR RSSFEEIVEE CMGYQGVMLD PEISMSDWTA
201: YDLDLDQILQ ASLDAYVCHQ LGVWTRLWEV
101: GNRCLIIQLG YCDQVPNNLR SFLADPETTF VGVWNGQDAG KLARCCHQLE IGELLDIRRY VTDSWGRSMR RSSFEEIVEE CMGYQGVMLD PEISMSDWTA
201: YDLDLDQILQ ASLDAYVCHQ LGVWTRLWEV
Arabidopsis Description
Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LHG7]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.