CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
cytosol 1
plasma membrane 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH63674	Soybean	cytosol	62.02	78.18
VIT_14s0060g01000.t01	Wine grape	nucleus	39.9	53.21
PGSC0003DMT400087534	Potato	cytosol, nucleus, plastid	39.42	51.9
Solyc01g100670.1.1	Tomato	cytosol	40.38	51.22
VIT_14s0060g00990.t01	Wine grape	nucleus	50.0	49.52
Solyc01g100680.1.1	Tomato	plastid	46.15	47.52
PGSC0003DMT400092627	Potato	nucleus	46.63	47.09
PGSC0003DMT400016348	Potato	nucleus	47.12	46.89
Solyc04g076930.1.1	Tomato	cytosol, nucleus, plastid	28.85	46.15
TraesCS3B01G135200.1	Wheat	nucleus, peroxisome, plastid	35.1	36.5
Zm00001d009130_P001	Maize	nucleus	37.5	36.45
TraesCS3D01G118000.1	Wheat	nucleus, peroxisome, plastid	34.62	36.0
KXG32361	Sorghum	mitochondrion	37.5	35.62
Os01t0300000-01	Rice	nucleus	33.65	34.83
TraesCS3A01G116100.1	Wheat	mitochondrion, nucleus, plastid	32.69	33.83
KRH00115	Soybean	nucleus	33.65	32.86
KRH49255	Soybean	nucleus	36.54	31.93
KRH49260	Soybean	cytosol, nucleus, peroxisome	31.73	31.13
HORVU7Hr1G098080.1	Barley	nucleus	27.88	29.44
HORVU3Hr1G021110.1	Barley	nucleus	27.88	29.44
KRH00116	Soybean	cytosol	29.81	29.38
KRH00114	Soybean	cytosol	31.73	29.2
KRH00112	Soybean	nucleus	25.0	26.0
KRH36952	Soybean	cytosol	25.48	25.73
Os01t0299700-01	Rice	cytosol, peroxisome	28.85	25.32
KRH11911	Soybean	nucleus	26.92	24.56
KRH31568	Soybean	mitochondrion	19.71	20.2
KRG97350	Soybean	nucleus	24.52	17.47

Protein Annotations

EntrezGene:100527339	InterPro:3'-5'_exonuclease_dom	Gene3D:3.30.420.10	MapMan:35.1	EMBL:ACUP02007430	EMBL:BT092173
UniProt:C6T412	EnsemblPlantsGene:GLYMA_12G144600	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004518
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008408	GO:GO:0009987	GO:GO:0016787
GO:GO:0090305	InterPro:IPR036397	EnsemblPlants:KRH26003	ProteinID:KRH26003	ProteinID:KRH26003.1	PFAM:PF01612
PANTHER:PTHR13620	PANTHER:PTHR13620:SF34	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	SMART:SM00474	SUPFAM:SSF53098
UniParc:UPI0001B1571B	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr12:-:19157619..19158770

Molecular Weight (calculated)

23274.4 Da

IEP (calculated)

6.506

GRAVY (calculated)

-0.050

Length

208 amino acids

Sequence
(BLAST)

001: MAMAAGNNNP IVFDPSTSMY LVSCDGLTIE TTITDKSGIV DKWIQVVSST YAGKQRIVGL DTEWTTAKKP KMKVAILQLC IENKCLIIQL FHMDNIPQSL
101: RSFLMDSNFE FVGVGVINDL RMLKNDYGLE CNKGIDVSLL AKEKWPHRIS SGALKYLAKE LVGLEMEKSK AVCTSEWQSK ELTQTQIEYA CIDAYASFKI
201: GKMILNQD

Best Arabidopsis Sequence Match ( AT2G36110.1 )
(BLAST)

001: MARIRRRIQK RHIHENRYID FFGERLIVTV THTTSTIRRW IHSIRFFSRL RSSHPLVVGL DVQWTPGGSD PPPDILQLCV GNRCLIIQLS HCKRIPEVLR
101: SFLEDETITF VGVWNSQDQG KLERFRHQLE IWRLLDIRHY LPTRLLNSSF EKIVEECLGY KGVRKDKEIC MSNWGARSLS HDQIVQASDD VYVCCKLGVK
201: ECIWKERSNV KERIWKESSN VKEHIWKESS KLYFVGVCF

Arabidopsis Description

Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SIH3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.