CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
plastid 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH26003	Soybean	nucleus	78.18	62.02
Solyc04g076930.1.1	Tomato	cytosol, nucleus, plastid	34.55	43.85
VIT_14s0060g01000.t01	Wine grape	nucleus	37.58	39.74
VIT_14s0060g00990.t01	Wine grape	nucleus	47.88	37.62
Solyc01g100670.1.1	Tomato	cytosol	36.36	36.59
PGSC0003DMT400087534	Potato	cytosol, nucleus, plastid	34.55	36.08
PGSC0003DMT400092627	Potato	nucleus	44.24	35.44
PGSC0003DMT400016348	Potato	nucleus	43.64	34.45
Solyc01g100680.1.1	Tomato	plastid	41.82	34.16
Zm00001d009130_P001	Maize	nucleus	32.73	25.23
TraesCS3B01G135200.1	Wheat	nucleus, peroxisome, plastid	29.09	24.0
KXG32361	Sorghum	mitochondrion	31.52	23.74
TraesCS3D01G118000.1	Wheat	nucleus, peroxisome, plastid	28.48	23.5
KRH49260	Soybean	cytosol, nucleus, peroxisome	29.7	23.11
KRH00115	Soybean	nucleus	29.7	23.0
Os01t0300000-01	Rice	nucleus	27.88	22.89
KRH49255	Soybean	nucleus	32.73	22.69
TraesCS3A01G116100.1	Wheat	mitochondrion, nucleus, plastid	26.06	21.39
KRH00116	Soybean	cytosol	27.27	21.33
KRH00114	Soybean	cytosol	29.09	21.24
HORVU7Hr1G098080.1	Barley	nucleus	23.03	19.29
HORVU3Hr1G021110.1	Barley	nucleus	23.03	19.29
KRH00112	Soybean	nucleus	23.03	19.0
KRH36952	Soybean	cytosol	23.64	18.93
Os01t0299700-01	Rice	cytosol, peroxisome	26.06	18.14
KRH11911	Soybean	nucleus	23.64	17.11
KRH31568	Soybean	mitochondrion	16.36	13.3
KRG97350	Soybean	nucleus	22.42	12.67

Protein Annotations

InterPro:3'-5'_exonuclease_dom	Gene3D:3.30.420.10	MapMan:35.2	UniProt:A0A0R0KA28	EMBL:ACUP02002705	EnsemblPlantsGene:GLYMA_04G191000
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004518	GO:GO:0005488	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0008408	GO:GO:0009987	GO:GO:0016787	GO:GO:0090305
InterPro:IPR036397	EnsemblPlants:KRH63674	ProteinID:KRH63674	ProteinID:KRH63674.1	PFAM:PF01612	PANTHER:PTHR13620
PANTHER:PTHR13620:SF34	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	SUPFAM:SSF53098	UniParc:UPI0006EDFB42	SEG:seg

Description

hypothetical protein

Coordinates

chr4:-:46158933..46159497

Molecular Weight (calculated)

18764.9 Da

IEP (calculated)

8.595

GRAVY (calculated)

-0.132

Length

165 amino acids

Sequence
(BLAST)

001: MAMTMTASNN NPTVFFNPTT SKYLVFYDGL TIETIITYKG SIAGKQRVVG LDTEWIPVEK TKKKVAILQL CIENKCLIIQ LFHMDNIPQS LRSFLMDSNF
101: EFVGVGNDYG LEYNKGIDVS LLAKKKWPDQ ISFGAQKCLT KELVYLDMEK SKAVCAREWK SKELT

Best Arabidopsis Sequence Match ( AT2G36110.1 )
(BLAST)

001: MARIRRRIQK RHIHENRYID FFGERLIVTV THTTSTIRRW IHSIRFFSRL RSSHPLVVGL DVQWTPGGSD PPPDILQLCV GNRCLIIQLS HCKRIPEVLR
101: SFLEDETITF VGVWNSQDQG KLERFRHQLE IWRLLDIRHY LPTRLLNSSF EKIVEECLGY KGVRKDKEIC MSNWGARSLS HDQIVQASDD VYVCCKLGVK
201: ECIWKERSNV KERIWKESSN VKEHIWKESS KLYFVGVCF

Arabidopsis Description

Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SIH3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.