Factsheet for Zm00001d009130_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG32361	Sorghum	mitochondrion	84.58	82.65
TraesCS3D01G118000.1	Wheat	nucleus, peroxisome, plastid	67.76	72.5
TraesCS3B01G135200.1	Wheat	nucleus, peroxisome, plastid	67.76	72.5
TraesCS3A01G116100.1	Wheat	mitochondrion, nucleus, plastid	65.42	69.65
Os01t0300000-01	Rice	nucleus	64.49	68.66
HORVU7Hr1G098080.1	Barley	nucleus	54.67	59.39
HORVU3Hr1G021110.1	Barley	nucleus	54.67	59.39
Os01t0299700-01	Rice	cytosol, peroxisome	54.67	49.37
PGSC0003DMT400087534	Potato	cytosol, nucleus, plastid	35.05	47.47
VIT_14s0060g01000.t01	Wine grape	nucleus	33.18	45.51
VIT_14s0060g00990.t01	Wine grape	nucleus	44.39	45.24
PGSC0003DMT400092627	Potato	nucleus	43.46	45.15
Solyc01g100680.1.1	Tomato	plastid	42.06	44.55
Solyc01g100670.1.1	Tomato	cytosol	33.64	43.9
PGSC0003DMT400016348	Potato	nucleus	42.52	43.54
Solyc04g076930.1.1	Tomato	cytosol, nucleus, plastid	23.83	39.23
Zm00001d043985_P001	Maize	cytosol, nucleus, plastid	35.51	38.0
KRH26003	Soybean	nucleus	36.45	37.5
Zm00001d011507_P001	Maize	cytosol	34.11	36.14
Zm00001d043554_P001	Maize	cytosol	32.71	34.31
KRH63674	Soybean	cytosol	25.23	32.73
Zm00001d018645_P001	Maize	mitochondrion	30.37	23.99
Zm00001d047288_P001	Maize	nucleus	19.63	20.79
Zm00001d036734_P001	Maize	nucleus	24.3	19.33
Zm00001d011513_P001	Maize	plastid	37.38	18.35
Zm00001d004468_P003	Maize	nucleus	23.36	16.5
Zm00001d022094_P001	Maize	nucleus	28.97	14.69
Zm00001d010107_P001	Maize	nucleus	28.5	5.93

Protein Annotations

EntrezGene:103635089	InterPro:3'-5'_exonuclease_dom	Gene3D:3.30.420.10	MapMan:35.1	ProteinID:AQK91372.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0004518	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0008408	GO:GO:0009987	GO:GO:0016740	GO:GO:0016787	GO:GO:0090305
InterPro:IPR036397	UniProt:K7UW05	PFAM:PF01612	PANTHER:PTHR13620	PANTHER:PTHR13620:SF34	InterPro:RNaseH-like_sf
InterPro:RNaseH_sf	SMART:SM00474	SUPFAM:SSF53098	UniParc:UPI0001CAB588	EnsemblPlantsGene:Zm00001d009130	EnsemblPlants:Zm00001d009130_P001
EnsemblPlants:Zm00001d009130_T001	:	:	:	:	:

Description

Polynucleotidyl transferase ribonuclease H-like superfamily protein

Coordinates

chr8:+:38668501..38669145

Molecular Weight (calculated)

23682.3 Da

IEP (calculated)

5.355

GRAVY (calculated)

-0.046

Length

214 amino acids

Sequence
(BLAST)

001: MFGRGFFGSE SRSNDLTTRL TVHFGSAMID TTVTRDAAVA DEWVRTVRAA NPRGAPLIVG LDCEWKPNYR SWTTSKVAIL QLCAGDRCLV LQLFYVDRIP
101: ASIRSFLADP DVFFVGIGVG EDAAKLATDY GLTCASPVEL ESRCNDYLGY YTGGPRLGLK GYAREVLGLV MEKPRGVTMS NWEKHDLEDA QIRYACIDAY
201: VSYKLGEKVL VLTD

Best Arabidopsis Sequence Match ( AT3G12410.1 )
(BLAST)

001: MASPTIRTVA SYNTHLEYSV DFFGDEFIVT VTWDSSVISR WIRNVLFNNR FSSHPLVVGV GVQWTPFSYY SDPRPNNYYA DPPPIRYYSD NPADILQLCV
101: GNRCLIIQLG YCDQVPNNLR SFLADPETTF VGVWNGQDAG KLARCCHQLE IGELLDIRRY VTDSWGRSMR RSSFEEIVEE CMGYQGVMLD PEISMSDWTA
201: YDLDLDQILQ ASLDAYVCHQ LGVWTRLWEV

Arabidopsis Description

Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LHG7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.