Factsheet for Zm00001d011513_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU87276	Sorghum	nucleus	32.57	62.83
TraesCS3D01G239600.1	Wheat	cytosol	27.98	51.69
TraesCS3B01G267900.1	Wheat	cytosol	27.52	48.78
TraesCS6A01G390200.1	Wheat	nucleus	21.79	47.98
Zm00001d011507_P001	Maize	cytosol	21.79	47.03
Zm00001d043985_P001	Maize	cytosol, nucleus, plastid	21.56	47.0
VIT_08s0040g00710.t01	Wine grape	cytosol	21.1	44.23
Zm00001d043554_P001	Maize	cytosol	20.41	43.63
PGSC0003DMT400093830	Potato	cytosol	20.41	43.41
Solyc10g078200.1.1	Tomato	nucleus	20.41	43.41
Os11t0222320-00	Rice	cytosol, nucleus	12.84	41.48
KRH00115	Soybean	nucleus	20.18	41.31
PGSC0003DMT400094103	Potato	mitochondrion	19.5	39.91
KRH00116	Soybean	cytosol	19.27	39.81
KRH49260	Soybean	cytosol, nucleus, peroxisome	19.27	39.62
PGSC0003DMT400075613	Potato	nucleus	19.95	39.55
KRH00114	Soybean	cytosol	20.41	39.38
Solyc01g103460.2.1	Tomato	cytosol	19.04	38.97
Solyc12g094540.1.1	Tomato	cytosol	18.12	38.73
KRH49255	Soybean	nucleus	20.87	38.24
Solyc11g006480.1.1	Tomato	nucleus	15.37	37.85
Solyc08g078620.1.1	Tomato	mitochondrion	17.89	37.68
PGSC0003DMT400064032	Potato	nucleus	18.58	37.67
Zm00001d009130_P001	Maize	nucleus	18.35	37.38
Solyc12g042390.1.1	Tomato	cytosol	17.89	35.94
PGSC0003DMT400036459	Potato	extracellular	17.66	35.65
PGSC0003DMT400032474	Potato	cytosol, nucleus, vacuole	18.81	35.19
Solyc08g007350.1.1	Tomato	cytosol	18.81	34.89
GSMUA_Achr1P12990_001	Banana	plastid	14.45	33.16
PGSC0003DMT400032554	Potato	cytosol	18.58	32.14
KRH00112	Soybean	nucleus	14.45	31.5
Os01t0660500-00	Rice	mitochondrion	25.23	28.13
Zm00001d047288_P001	Maize	nucleus	10.32	22.28
Zm00001d018645_P001	Maize	mitochondrion	13.3	21.4
Zm00001d036734_P001	Maize	nucleus	12.61	20.45
Zm00001d022094_P001	Maize	nucleus	18.12	18.72
Zm00001d004468_P003	Maize	nucleus	12.61	18.15
Zm00001d010107_P001	Maize	nucleus	19.5	8.26

Protein Annotations

Gene3D:1.20.5.710	MapMan:17.7.2.1.10	InterPro:3'-5'_exonuclease_dom	Gene3D:3.30.1390.10	Gene3D:3.30.420.10	UniProt:A0A1D6G0W4
ProteinID:AQK97097.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003735	GO:GO:0003824
GO:GO:0004518	GO:GO:0004527	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006139	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0008408	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0016787
GO:GO:0019538	GO:GO:0090305	InterPro:IPR014719	InterPro:IPR036397	HAMAP:MF_00368	PFAM:PD001326
PFAM:PF00542	PFAM:PF01612	PFAM:PF16320	PANTHER:PTHR13620	PANTHER:PTHR13620:SF32	InterPro:RNaseH-like_sf
InterPro:RNaseH_sf	InterPro:Ribosomal_L7/12	InterPro:Ribosomal_L7/12_C/ClpS-like	InterPro:Ribosomal_L7/L12_C	InterPro:Ribosomal_L7/L12_oligo	InterPro:Ribosomal_L7/L12_oligo_N_sf
SMART:SM00474	SUPFAM:SSF48300	SUPFAM:SSF53098	SUPFAM:SSF54736	TIGRFAMs:TIGR00855	UniParc:UPI0008459EFC
EnsemblPlantsGene:Zm00001d011513	EnsemblPlants:Zm00001d011513_P001	EnsemblPlants:Zm00001d011513_T001	SEG:seg	:	:

Description

Polynucleotidyl transferase ribonuclease H-like superfamily protein

Coordinates

chr8:+:152937472..152939599

Molecular Weight (calculated)

47102.8 Da

IEP (calculated)

8.149

GRAVY (calculated)

-0.053

Length

436 amino acids

Sequence
(BLAST)

001: MASTTLSSAF SLLSRPSTSP CPAVSLPRSS FPVPDSRRRR RAVTVASTAT ESPKVLELGD TIAGLTLEEA RNLVDHLQER LGVTAAAFAP AAVVAAPGAG
101: GGAAAEEEAP VEKTEFDVVI EEVPSSARIA TIKVVRVLTS LALKEAKDLI EGLPKKLKEA VSKDEAEDAK KQLEEVGAKC ECDMLKTASW LSTRQGDQGT
201: TTTARASRPC PLLPAGAGAM TFAYDTDVVM DDGTIIKTTV TNSGDATKLF LREVRQTRKP LIVGLDTEWR VIRRQGRRPR NRMAVLQLCV GHRCLVFQIV
301: AADYVPAALK AFLASPQHRF VGVVVDVDVE RLRCDCNIVV NNTVDLRYAA ADVLGRPHLR TAGLKILARE VMGVEIEKPK HLTCSEWDRP LSQAQVRYAA
401: IDAFVSYEVG RLVLTREHAQ DAAFTGAMTI LPSQLP

Best Arabidopsis Sequence Match ( AT3G27850.1 )
(BLAST)

001: MASTTLSIAT TIRSSSPLTS ASTHHFLSKP TAIEFPFRLS SSSSHRAINL RPISAVEAPE KIEKIGSEIS SLTLEEARIL VDYLQDKFGV SPLSLAPAAA
101: AVAAPADGGA AAVVEEQTEF DVVINEVPSS SRIAVIKAVR ALTSLALKEA KELIEGLPKK FKEGITKDEA EEAKKTLEEA GAKVSIA

Arabidopsis Description

RPL12C50S ribosomal protein L12-3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P36212]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.