Factsheet for Solyc10g078200.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400093830	Potato	cytosol	83.9	83.9
Solyc12g094540.1.1	Tomato	cytosol	54.63	54.9
Solyc12g042390.1.1	Tomato	cytosol	53.66	50.69
Zm00001d043985_P001	Maize	cytosol, nucleus, plastid	47.8	49.0
Zm00001d011507_P001	Maize	cytosol	47.8	48.51
EES03384	Sorghum	nucleus	47.8	48.51
EES03385	Sorghum	cytosol, nucleus, plastid	46.83	47.76
HORVU7Hr1G071770.1	Barley	cytosol	49.27	47.64
TraesCS7A01G302600.1	Wheat	cytosol	48.29	47.37
TraesCS3A01G278600.1	Wheat	cytosol	43.9	46.88
TraesCS3D01G239900.1	Wheat	cytosol, nucleus, plastid	44.88	46.7
TraesCS3B01G268100.1	Wheat	cytosol, nucleus, plastid	44.88	46.7
TraesCS3A01G239600.1	Wheat	cytosol	44.88	46.7
EES01442	Sorghum	nucleus	47.32	46.63
TraesCS7B01G202700.1	Wheat	cytosol	47.32	46.63
TraesCS5A01G007100.1	Wheat	cytosol	45.37	46.27
TraesCS3B01G312800.1	Wheat	nucleus	46.83	46.15
TraesCS3D01G278900.1	Wheat	nucleus	46.83	46.15
Os01t0737600-00	Rice	cytosol	46.83	46.15
Solyc01g103460.2.1	Tomato	cytosol	47.8	46.01
TraesCS4A01G026000.1	Wheat	cytosol	42.44	45.55
Os01t0660800-01	Rice	nucleus	43.9	45.23
TraesCS7D01G297900.1	Wheat	cytosol	40.0	43.85
TraesCS3D01G239800.1	Wheat	nucleus	42.44	43.5
TraesCS3A01G239500.1	Wheat	nucleus	42.44	43.5
EES01443	Sorghum	cytosol	42.93	43.35
TraesCS6B01G430200.1	Wheat	cytosol	41.95	43.0
Solyc11g006480.1.1	Tomato	nucleus	37.07	42.94
TraesCS2A01G565200.1	Wheat	cytosol	48.29	42.67
Solyc08g078620.1.1	Tomato	mitochondrion	42.93	42.51
Zm00001d043554_P001	Maize	cytosol	41.95	42.16
EES01441	Sorghum	cytosol, nucleus, plastid	42.44	41.43
Os04t0225100-01	Rice	cytosol	42.44	41.23
TraesCS2B01G625700.1	Wheat	cytosol	46.83	41.2
KXG33324	Sorghum	cytosol	39.51	41.12
HORVU3Hr1G069990.1	Barley	nucleus	45.37	40.61
TraesCS6A01G390200.1	Wheat	nucleus	39.02	40.4
Os01t0737700-00	Rice	nucleus	45.37	39.74
Solyc01g100670.1.1	Tomato	cytosol	31.71	39.63
Solyc08g007350.1.1	Tomato	cytosol	44.39	38.72
HORVU0Hr1G006750.1	Barley	nucleus	38.05	38.61
Solyc01g100680.1.1	Tomato	plastid	38.05	38.61
Solyc04g076930.1.1	Tomato	cytosol, nucleus, plastid	24.39	38.46
OQU87276	Sorghum	nucleus	39.51	35.84
EES03381	Sorghum	nucleus	39.02	35.4
GSMUA_Achr1P12990_001	Banana	plastid	29.76	32.11
Os11t0222320-00	Rice	cytosol, nucleus	20.98	31.85
TraesCS3D01G239600.1	Wheat	cytosol	36.59	31.78
TraesCS3B01G267900.1	Wheat	cytosol	37.56	31.3
Zm00001d047288_P001	Maize	nucleus	22.93	23.27
Os01t0660500-00	Rice	mitochondrion	42.44	22.25
Zm00001d036734_P001	Maize	nucleus	28.78	21.93
Zm00001d011513_P001	Maize	plastid	43.41	20.41
Solyc09g092340.2.1	Tomato	nucleus	26.34	18.0
Zm00001d022094_P001	Maize	nucleus	31.71	15.4
Zm00001d010107_P001	Maize	nucleus	31.22	6.22

Protein Annotations

InterPro:3'-5'_exonuclease_dom	Gene3D:3.30.420.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824
GO:GO:0004518	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008408	GO:GO:0009987
GO:GO:0016787	GO:GO:0090305	InterPro:IPR036397	UniProt:K4D263	PFAM:PF01612	PANTHER:PTHR13620
PANTHER:PTHR13620:SF34	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	SMART:SM00474	SUPFAM:SSF53098	EnsemblPlantsGene:Solyc10g078200.1
EnsemblPlants:Solyc10g078200.1.1	UniParc:UPI000276A0B1	:	:	:	:

Description

No Description!

Coordinates

chr10:+:60068877..60069494

Molecular Weight (calculated)

23653.3 Da

IEP (calculated)

5.110

GRAVY (calculated)

-0.137

Length

205 amino acids

Sequence
(BLAST)

001: MAFPIEVEDN RYKLYDVFFF SDRILTTVTS NPDVVTNWIS GIEYVHRSRL NRLIVGLDVE WRPNFTRHQN NPVATLQLCV GRRGLIFQVI YCEYIPESLK
101: EFLLNPRYAF VGVGIANDIE KLEEDYTLRV NNSVDLRELA DCSLRNAGLK RLCQAVLGKE MEKPKHVAIG RWDNECLDND QVQYACVDAF VSFEIGRCMI
201: ATAYS

Best Arabidopsis Sequence Match ( AT2G36110.1 )
(BLAST)

001: MARIRRRIQK RHIHENRYID FFGERLIVTV THTTSTIRRW IHSIRFFSRL RSSHPLVVGL DVQWTPGGSD PPPDILQLCV GNRCLIIQLS HCKRIPEVLR
101: SFLEDETITF VGVWNSQDQG KLERFRHQLE IWRLLDIRHY LPTRLLNSSF EKIVEECLGY KGVRKDKEIC MSNWGARSLS HDQIVQASDD VYVCCKLGVK
201: ECIWKERSNV KERIWKESSN VKEHIWKESS KLYFVGVCF

Arabidopsis Description

Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SIH3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.