Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g078200.1.1 | Tomato | nucleus | 50.69 | 53.66 |
| Solyc12g094540.1.1 | Tomato | cytosol | 47.0 | 50.0 |
| Os01t0660800-01 | Rice | nucleus | 41.01 | 44.72 |
| Zm00001d011507_P001 | Maize | cytosol | 41.47 | 44.55 |
| TraesCS3A01G239600.1 | Wheat | cytosol | 40.09 | 44.16 |
| EES03384 | Sorghum | nucleus | 41.01 | 44.06 |
| TraesCS4A01G026000.1 | Wheat | cytosol | 38.71 | 43.98 |
| TraesCS5A01G007100.1 | Wheat | cytosol | 40.55 | 43.78 |
| Solyc01g103460.2.1 | Tomato | cytosol | 42.86 | 43.66 |
| TraesCS3B01G268100.1 | Wheat | cytosol, nucleus, plastid | 39.63 | 43.65 |
| TraesCS3D01G239900.1 | Wheat | cytosol, nucleus, plastid | 39.63 | 43.65 |
| Zm00001d043985_P001 | Maize | cytosol, nucleus, plastid | 39.17 | 42.5 |
| Os01t0737600-00 | Rice | cytosol | 40.55 | 42.31 |
| TraesCS6B01G430200.1 | Wheat | cytosol | 38.71 | 42.0 |
| HORVU7Hr1G071770.1 | Barley | cytosol | 40.55 | 41.51 |
| EES03385 | Sorghum | cytosol, nucleus, plastid | 38.25 | 41.29 |
| TraesCS3A01G278600.1 | Wheat | cytosol | 36.41 | 41.15 |
| TraesCS3D01G239800.1 | Wheat | nucleus | 37.79 | 41.0 |
| Solyc11g006480.1.1 | Tomato | nucleus | 33.18 | 40.68 |
| TraesCS7A01G302600.1 | Wheat | cytosol | 39.17 | 40.67 |
| TraesCS3A01G239500.1 | Wheat | nucleus | 37.33 | 40.5 |
| Solyc04g076930.1.1 | Tomato | cytosol, nucleus, plastid | 23.96 | 40.0 |
| TraesCS7B01G202700.1 | Wheat | cytosol | 38.25 | 39.9 |
| EES01442 | Sorghum | nucleus | 38.25 | 39.9 |
| EES01443 | Sorghum | cytosol | 37.33 | 39.9 |
| Solyc08g078620.1.1 | Tomato | mitochondrion | 37.79 | 39.61 |
| TraesCS3D01G278900.1 | Wheat | nucleus | 37.79 | 39.42 |
| TraesCS3B01G312800.1 | Wheat | nucleus | 37.79 | 39.42 |
| TraesCS6A01G390200.1 | Wheat | nucleus | 35.94 | 39.39 |
| Zm00001d043554_P001 | Maize | cytosol | 36.87 | 39.22 |
| Solyc08g007350.1.1 | Tomato | cytosol | 41.01 | 37.87 |
| Solyc01g100670.1.1 | Tomato | cytosol | 28.57 | 37.8 |
| KXG33324 | Sorghum | cytosol | 34.1 | 37.56 |
| Os04t0225100-01 | Rice | cytosol | 36.41 | 37.44 |
| EES01441 | Sorghum | cytosol, nucleus, plastid | 35.94 | 37.14 |
| HORVU0Hr1G006750.1 | Barley | nucleus | 34.56 | 37.13 |
| HORVU3Hr1G069990.1 | Barley | nucleus | 38.71 | 36.68 |
| Solyc01g100680.1.1 | Tomato | plastid | 34.1 | 36.63 |
| TraesCS7D01G297900.1 | Wheat | cytosol | 31.34 | 36.36 |
| TraesCS2A01G565200.1 | Wheat | cytosol | 38.71 | 36.21 |
| TraesCS2B01G625700.1 | Wheat | cytosol | 37.79 | 35.19 |
| Os01t0737700-00 | Rice | nucleus | 37.33 | 34.62 |
| OQU87276 | Sorghum | nucleus | 34.56 | 33.19 |
| GSMUA_Achr1P12990_001 | Banana | plastid | 28.57 | 32.63 |
| Os11t0222320-00 | Rice | cytosol, nucleus | 20.28 | 32.59 |
| EES03381 | Sorghum | nucleus | 33.18 | 31.86 |
| TraesCS3B01G267900.1 | Wheat | cytosol | 33.18 | 29.27 |
| TraesCS3D01G239600.1 | Wheat | cytosol | 31.34 | 28.81 |
| Zm00001d047288_P001 | Maize | nucleus | 22.58 | 24.26 |
| Zm00001d036734_P001 | Maize | nucleus | 25.81 | 20.82 |
| Os01t0660500-00 | Rice | mitochondrion | 36.87 | 20.46 |
| Solyc09g092340.2.1 | Tomato | nucleus | 27.65 | 20.0 |
| Zm00001d011513_P001 | Maize | plastid | 35.94 | 17.89 |
| Zm00001d022094_P001 | Maize | nucleus | 27.65 | 14.22 |
| Zm00001d010107_P001 | Maize | nucleus | 26.73 | 5.64 |
Protein Annotations
| InterPro:3'-5'_exonuclease_dom | Gene3D:3.30.420.10 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 |
| GO:GO:0004518 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005737 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008408 | GO:GO:0009987 |
| GO:GO:0016787 | GO:GO:0090305 | InterPro:IPR036397 | UniProt:K4DF32 | PFAM:PF01612 | PANTHER:PTHR13620 |
| PANTHER:PTHR13620:SF34 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | SMART:SM00474 | SUPFAM:SSF53098 | EnsemblPlantsGene:Solyc12g042390.1 |
| EnsemblPlants:Solyc12g042390.1.1 | UniParc:UPI000276AB1E | : | : | : | : |
Description
No Description!
Coordinates
chr12:-:40252363..40253016
Molecular Weight (calculated)
24959.6 Da
IEP (calculated)
4.690
GRAVY (calculated)
-0.057
Length
217 amino acids
Sequence
(BLAST)
(BLAST)
001: MNQSIVAHQV QDHRYINYDV SFYGDSILTT VTWDPEIVTH WITDVESDVF FRDVVGLDIE WRPHYGQIQN PVATLQLCVG RRCLIFQLLQ SRNPIPQSLI
101: TFLDTYTFVG VGIESDVEKL ERDHGVIVSF SVDLRELAST AYEAFGLGYQ IRTNAALKEL CSVVLAKEMV KPAHITRSRW DNRYLNEEQV EYACIDAFVC
201: FEIEKRLNAS GYGVNWL
101: TFLDTYTFVG VGIESDVEKL ERDHGVIVSF SVDLRELAST AYEAFGLGYQ IRTNAALKEL CSVVLAKEMV KPAHITRSRW DNRYLNEEQV EYACIDAFVC
201: FEIEKRLNAS GYGVNWL
001: MARIRRRIQK RHIHENRYID FFGERLIVTV THTTSTIRRW IHSIRFFSRL RSSHPLVVGL DVQWTPGGSD PPPDILQLCV GNRCLIIQLS HCKRIPEVLR
101: SFLEDETITF VGVWNSQDQG KLERFRHQLE IWRLLDIRHY LPTRLLNSSF EKIVEECLGY KGVRKDKEIC MSNWGARSLS HDQIVQASDD VYVCCKLGVK
201: ECIWKERSNV KERIWKESSN VKEHIWKESS KLYFVGVCF
101: SFLEDETITF VGVWNSQDQG KLERFRHQLE IWRLLDIRHY LPTRLLNSSF EKIVEECLGY KGVRKDKEIC MSNWGARSLS HDQIVQASDD VYVCCKLGVK
201: ECIWKERSNV KERIWKESSN VKEHIWKESS KLYFVGVCF
Arabidopsis Description
Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SIH3]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.