Factsheet for Zm00001d043554_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES01443	Sorghum	cytosol	82.84	83.25
Os04t0225100-01	Rice	cytosol	72.55	70.14
Zm00001d011507_P001	Maize	cytosol	49.51	50.0
Zm00001d043985_P001	Maize	cytosol, nucleus, plastid	46.57	47.5
PGSC0003DMT400093830	Potato	cytosol	44.12	43.9
VIT_08s0040g00710.t01	Wine grape	cytosol	44.61	43.75
KRH00116	Soybean	cytosol	44.12	42.65
Solyc10g078200.1.1	Tomato	nucleus	42.16	41.95
KRH00115	Soybean	nucleus	43.63	41.78
Solyc08g078620.1.1	Tomato	mitochondrion	42.16	41.55
KRH49260	Soybean	cytosol, nucleus, peroxisome	41.18	39.62
PGSC0003DMT400075613	Potato	nucleus	42.65	39.55
Solyc12g094540.1.1	Tomato	cytosol	39.22	39.22
PGSC0003DMT400094103	Potato	mitochondrion	40.2	38.5
KRH00114	Soybean	cytosol	42.16	38.05
KRH49255	Soybean	nucleus	44.12	37.82
Solyc01g103460.2.1	Tomato	cytosol	39.22	37.56
Solyc11g006480.1.1	Tomato	nucleus	32.35	37.29
PGSC0003DMT400064032	Potato	nucleus	39.22	37.21
Solyc12g042390.1.1	Tomato	cytosol	39.22	36.87
PGSC0003DMT400032474	Potato	cytosol, nucleus, vacuole	39.22	34.33
Solyc08g007350.1.1	Tomato	cytosol	38.73	33.62
Zm00001d009130_P001	Maize	nucleus	34.31	32.71
PGSC0003DMT400032554	Potato	cytosol	39.71	32.14
PGSC0003DMT400036459	Potato	extracellular	33.82	31.94
GSMUA_Achr1P12990_001	Banana	plastid	29.41	31.58
KRH00112	Soybean	nucleus	29.9	30.5
Zm00001d047288_P001	Maize	nucleus	22.55	22.77
Zm00001d018645_P001	Maize	mitochondrion	28.92	21.77
Zm00001d036734_P001	Maize	nucleus	26.96	20.45
Zm00001d011513_P001	Maize	plastid	43.63	20.41
Zm00001d004468_P003	Maize	nucleus	26.47	17.82
Zm00001d022094_P001	Maize	nucleus	33.82	16.35
Zm00001d010107_P001	Maize	nucleus	33.33	6.61

Protein Annotations

EntrezGene:100283311	InterPro:3'-5'_exonuclease_dom	Gene3D:3.30.420.10	MapMan:35.2	UniProt:B6TGX6	EMBL:EU964241
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0004518	GO:GO:0005488
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008408	GO:GO:0009987	GO:GO:0016787
GO:GO:0090305	InterPro:IPR036397	ProteinID:ONM38445.1	PFAM:PF01612	PANTHER:PTHR13620	PANTHER:PTHR13620:SF14
InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	SUPFAM:SSF53098	UniParc:UPI000182E692	EnsemblPlantsGene:Zm00001d043554	EnsemblPlants:Zm00001d043554_P001
EnsemblPlants:Zm00001d043554_T001	SEG:seg	:	:	:	:

Description

Werner syndrome ATP-dependent helicase

Coordinates

chr3:+:203694830..203695444

Molecular Weight (calculated)

22713.2 Da

IEP (calculated)

5.248

GRAVY (calculated)

0.102

Length

204 amino acids

Sequence
(BLAST)

001: MATEIQGYYD DGTAVVSFDV HNIDTTLTNL GSVVEWWLGE TYRLHHRGHI AGLDVEWRPA RVPGPVPVAV LQICVDHRCL VFQILQADYI PDALSRFLAD
101: RRFTFVGVGI SGDVAKLRAG YRLGVASAVD LRVLAADTLE VPELLRAGLQ TLVWEVMGVQ MVKPHHVRVS AWDTPTLSED QLKYACADAF ASFEVGRRLY
201: EGDY

Best Arabidopsis Sequence Match ( AT2G36110.1 )
(BLAST)

001: MARIRRRIQK RHIHENRYID FFGERLIVTV THTTSTIRRW IHSIRFFSRL RSSHPLVVGL DVQWTPGGSD PPPDILQLCV GNRCLIIQLS HCKRIPEVLR
101: SFLEDETITF VGVWNSQDQG KLERFRHQLE IWRLLDIRHY LPTRLLNSSF EKIVEECLGY KGVRKDKEIC MSNWGARSLS HDQIVQASDD VYVCCKLGVK
201: ECIWKERSNV KERIWKESSN VKEHIWKESS KLYFVGVCF

Arabidopsis Description

Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SIH3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.