Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d036734_P001 | Maize | nucleus | 63.86 | 47.96 |
| Zm00001d043985_P001 | Maize | cytosol, nucleus, plastid | 41.09 | 41.5 |
| EES03385 | Sorghum | cytosol, nucleus, plastid | 31.68 | 31.84 |
| Zm00001d011507_P001 | Maize | cytosol | 29.21 | 29.21 |
| TraesCS3D01G239800.1 | Wheat | nucleus | 26.73 | 27.0 |
| TraesCS3A01G239500.1 | Wheat | nucleus | 26.73 | 27.0 |
| VIT_08s0040g00710.t01 | Wine grape | cytosol | 25.74 | 25.0 |
| PGSC0003DMT400093830 | Potato | cytosol | 23.76 | 23.41 |
| Solyc11g006480.1.1 | Tomato | nucleus | 20.3 | 23.16 |
| Solyc01g103460.2.1 | Tomato | cytosol | 24.26 | 23.0 |
| Solyc10g078200.1.1 | Tomato | nucleus | 23.27 | 22.93 |
| PGSC0003DMT400036459 | Potato | extracellular | 24.26 | 22.69 |
| GSMUA_Achr1P12990_001 | Banana | plastid | 21.29 | 22.63 |
| Solyc12g042390.1.1 | Tomato | cytosol | 24.26 | 22.58 |
| Zm00001d043554_P001 | Maize | cytosol | 22.77 | 22.55 |
| KRH00115 | Soybean | nucleus | 23.76 | 22.54 |
| PGSC0003DMT400064032 | Potato | nucleus | 23.76 | 22.33 |
| Solyc12g094540.1.1 | Tomato | cytosol | 22.28 | 22.06 |
| KRH00116 | Soybean | cytosol | 22.77 | 21.8 |
| Solyc08g078620.1.1 | Tomato | mitochondrion | 22.28 | 21.74 |
| Solyc08g007350.1.1 | Tomato | cytosol | 24.75 | 21.28 |
| PGSC0003DMT400075613 | Potato | nucleus | 22.28 | 20.45 |
| KRH49260 | Soybean | cytosol, nucleus, peroxisome | 21.29 | 20.28 |
| PGSC0003DMT400094103 | Potato | mitochondrion | 21.29 | 20.19 |
| PGSC0003DMT400032474 | Potato | cytosol, nucleus, vacuole | 23.27 | 20.17 |
| KRH00114 | Soybean | cytosol | 22.28 | 19.91 |
| Zm00001d009130_P001 | Maize | nucleus | 20.79 | 19.63 |
| PGSC0003DMT400032554 | Potato | cytosol | 24.26 | 19.44 |
| KRH49255 | Soybean | nucleus | 22.77 | 19.33 |
| KRH00112 | Soybean | nucleus | 15.84 | 16.0 |
| Zm00001d018645_P001 | Maize | mitochondrion | 18.81 | 14.02 |
| Zm00001d004468_P003 | Maize | nucleus | 16.83 | 11.22 |
| Zm00001d011513_P001 | Maize | plastid | 22.28 | 10.32 |
| Zm00001d022094_P001 | Maize | nucleus | 16.83 | 8.06 |
| Zm00001d010107_P001 | Maize | nucleus | 16.34 | 3.21 |
Protein Annotations
| EnsemblPlants:Zm00001d047288_P001 | EnsemblPlants:Zm00001d047288_T001 | EnsemblPlantsGene:Zm00001d047288 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0016740 | InterPro:RNaseH-like_sf | PANTHER:PTHR13620 | PANTHER:PTHR13620:SF34 | ProteinID:AQL06085.1 |
| SEG:seg | SUPFAM:SSF53098 | UniParc:UPI000220BB60 | UniProt:K7VL40 | MapMan:35.2 | : |
Description
Polynucleotidyl transferase ribonuclease H-like superfamily protein
Coordinates
chr9:+:125635631..125636239
Molecular Weight (calculated)
22142.3 Da
IEP (calculated)
10.435
GRAVY (calculated)
-0.592
Length
202 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLLSCMSGK SEAAASDPGP RGEGGGPMRG RLQCVGGKKG CSRGPAVRVA RERVGLDVEW RPSFSGAYSK TAIHQLCVGR RCLIFQLLHA DYVPNTLDEF
101: LSDPDYTFVG VGSRTTTTWR WRTRGTWPNS WRRRWGARTS ATRACRASRE PSWTPTSRSR SGLEVANAED LAELAAKEMG RPDLAELAAK EMGRPDLRNT
201: GL
101: LSDPDYTFVG VGSRTTTTWR WRTRGTWPNS WRRRWGARTS ATRACRASRE PSWTPTSRSR SGLEVANAED LAELAAKEMG RPDLAELAAK EMGRPDLRNT
201: GL
001: MARIRRRIQK RHIHENRYID FFGERLIVTV THTTSTIRRW IHSIRFFSRL RSSHPLVVGL DVQWTPGGSD PPPDILQLCV GNRCLIIQLS HCKRIPEVLR
101: SFLEDETITF VGVWNSQDQG KLERFRHQLE IWRLLDIRHY LPTRLLNSSF EKIVEECLGY KGVRKDKEIC MSNWGARSLS HDQIVQASDD VYVCCKLGVK
201: ECIWKERSNV KERIWKESSN VKEHIWKESS KLYFVGVCF
101: SFLEDETITF VGVWNSQDQG KLERFRHQLE IWRLLDIRHY LPTRLLNSSF EKIVEECLGY KGVRKDKEIC MSNWGARSLS HDQIVQASDD VYVCCKLGVK
201: ECIWKERSNV KERIWKESSN VKEHIWKESS KLYFVGVCF
Arabidopsis Description
Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SIH3]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.