Factsheet for Zm00001d036734_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d047288_P001	Maize	nucleus	47.96	63.86
Zm00001d043985_P001	Maize	cytosol, nucleus, plastid	40.89	55.0
EES03385	Sorghum	cytosol, nucleus, plastid	33.46	44.78
Zm00001d011507_P001	Maize	cytosol	26.77	35.64
TraesCS3D01G239800.1	Wheat	nucleus	25.28	34.0
TraesCS3A01G239500.1	Wheat	nucleus	25.28	34.0
VIT_08s0040g00710.t01	Wine grape	cytosol	24.54	31.73
Solyc10g078200.1.1	Tomato	nucleus	21.93	28.78
PGSC0003DMT400093830	Potato	cytosol	21.93	28.78
Solyc11g006480.1.1	Tomato	nucleus	18.59	28.25
Solyc08g078620.1.1	Tomato	mitochondrion	21.19	27.54
Zm00001d043554_P001	Maize	cytosol	20.45	26.96
Solyc12g094540.1.1	Tomato	cytosol	20.45	26.96
Solyc08g007350.1.1	Tomato	cytosol	23.05	26.38
GSMUA_Achr1P12990_001	Banana	plastid	18.59	26.32
Solyc01g103460.2.1	Tomato	cytosol	20.82	26.29
Solyc12g042390.1.1	Tomato	cytosol	20.82	25.81
PGSC0003DMT400036459	Potato	extracellular	20.45	25.46
PGSC0003DMT400064032	Potato	nucleus	19.7	24.65
KRH00116	Soybean	cytosol	19.33	24.64
PGSC0003DMT400094103	Potato	mitochondrion	19.33	24.41
Zm00001d009130_P001	Maize	nucleus	19.33	24.3
PGSC0003DMT400075613	Potato	nucleus	19.7	24.09
PGSC0003DMT400032474	Potato	cytosol, nucleus, vacuole	20.45	23.61
KRH49260	Soybean	cytosol, nucleus, peroxisome	18.59	23.58
KRH00115	Soybean	nucleus	18.59	23.47
PGSC0003DMT400032554	Potato	cytosol	21.93	23.41
KRH00114	Soybean	cytosol	19.33	23.01
KRH00112	Soybean	nucleus	17.1	23.0
KRH49255	Soybean	nucleus	19.7	22.27
Zm00001d018645_P001	Maize	mitochondrion	16.36	16.24
Zm00001d004468_P003	Maize	nucleus	14.5	12.87
Zm00001d011513_P001	Maize	plastid	20.45	12.61
Zm00001d022094_P001	Maize	nucleus	17.1	10.9
Zm00001d010107_P001	Maize	nucleus	16.36	4.28

Protein Annotations

EnsemblPlants:Zm00001d036734_P001	EnsemblPlants:Zm00001d036734_T001	EnsemblPlantsGene:Zm00001d036734	Gene3D:3.30.420.10	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0005488	GO:GO:0016740	InterPro:IPR036397	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf
PANTHER:PTHR13620	PANTHER:PTHR13620:SF34	ProteinID:AQK81784.1	SUPFAM:SSF53098	UniParc:UPI000220803C	UniProt:A0A1D6LQM2
MapMan:35.2	:	:	:	:	:

Description

Polynucleotidyl transferase ribonuclease H-like superfamily protein

Coordinates

chr6:+:99375810..99377373

Molecular Weight (calculated)

30262.7 Da

IEP (calculated)

9.419

GRAVY (calculated)

-0.688

Length

269 amino acids

Sequence
(BLAST)

001: MGRFGRHEVA ATARYCEESE SSRKSDFWKH ELDINLAKRH ASHWEQAGHF GSKSTGKPKE PMEPIERDVR HMMHVHGQPN LHLIAVVFAF TTAHRPAPKQ
101: RISPEYCGGK KGCSRGPAVR VARERVGMDV EWRPSFSGAY SKTTIHQLCV GRRYLIFQLL HADYVPNTLD EFLSDPDYTF VGVGSRTTTT WRASREPSWT
201: PTSRSRSGLE VVNEEDLAEL TAKEIGRSNL RNAGLQGIAR AIMDAHVKKP QRVRTGPSDA SSLSDEQIE

Best Arabidopsis Sequence Match ( AT2G36110.1 )
(BLAST)

001: MARIRRRIQK RHIHENRYID FFGERLIVTV THTTSTIRRW IHSIRFFSRL RSSHPLVVGL DVQWTPGGSD PPPDILQLCV GNRCLIIQLS HCKRIPEVLR
101: SFLEDETITF VGVWNSQDQG KLERFRHQLE IWRLLDIRHY LPTRLLNSSF EKIVEECLGY KGVRKDKEIC MSNWGARSLS HDQIVQASDD VYVCCKLGVK
201: ECIWKERSNV KERIWKESSN VKEHIWKESS KLYFVGVCF

Arabidopsis Description

Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SIH3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.