Factsheet for Zm00001d004468_P003

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES11779	Sorghum	nucleus	92.74	90.35
HORVU2Hr1G001690.1	Barley	plastid	55.45	72.1
Os04t0129200-00	Rice	nucleus	68.98	70.13
TraesCS2A01G011600.1	Wheat	nucleus	67.66	69.26
TraesCS2B01G010000.1	Wheat	nucleus	67.0	68.81
TraesCS2D01G012000.1	Wheat	nucleus	67.0	68.12
Solyc09g092340.2.1	Tomato	nucleus	44.88	45.33
PGSC0003DMT400053073	Potato	nucleus	43.89	44.19
KRH31568	Soybean	mitochondrion	29.04	43.35
GSMUA_AchrUn_...	Banana	nucleus	40.26	42.51
KRG97350	Soybean	nucleus	39.93	41.44
CDY50420	Canola	nucleus	36.96	40.73
Bra032748.1-P	Field mustard	nucleus	36.96	40.43
CDY01171	Canola	nucleus	36.63	40.36
AT4G13870.2	Thale cress	nucleus	36.96	38.89
VIT_05s0029g00410.t01	Wine grape	nucleus	37.62	37.87
Zm00001d043985_P001	Maize	cytosol, nucleus, plastid	18.15	27.5
Zm00001d043554_P001	Maize	cytosol	17.82	26.47
Zm00001d011507_P001	Maize	cytosol	16.83	25.25
AT4G13885.1	Thale cress	nucleus	21.45	24.71
Zm00001d009130_P001	Maize	nucleus	16.5	23.36
Zm00001d018645_P001	Maize	mitochondrion	15.84	17.71
Zm00001d047288_P001	Maize	nucleus	11.22	16.83
Zm00001d036734_P001	Maize	nucleus	12.87	14.5
Zm00001d011513_P001	Maize	plastid	18.15	12.61
Zm00001d022094_P001	Maize	nucleus	17.16	12.32
Zm00001d010107_P001	Maize	nucleus	17.49	5.15

Protein Annotations

EntrezGene:100193139	InterPro:3'-5'_exonuclease_dom	Gene3D:3.30.420.10	MapMan:35.1	UniProt:B4FDY5	EMBL:BT035323
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004518	GO:GO:0004527	GO:GO:0005488
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008408	GO:GO:0009987	GO:GO:0016787
GO:GO:0090305	InterPro:IPR036397	ProteinID:ONM18987.1	ProteinID:ONM18989.1	PFAM:PF01612	PANTHER:PTHR13620
PANTHER:PTHR13620:SF19	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	SMART:SM00474	SUPFAM:SSF53098	UniParc:UPI00017B665C
EnsemblPlantsGene:Zm00001d004468	EnsemblPlants:Zm00001d004468_P003	EnsemblPlants:Zm00001d004468_T003	SEG:seg	:	:

Description

Werner Syndrome-like exonuclease

Coordinates

chr2:-:113818917..113827650

Molecular Weight (calculated)

33665.1 Da

IEP (calculated)

6.928

GRAVY (calculated)

-0.356

Length

303 amino acids

Sequence
(BLAST)

001: MAMHPVAGAG APPASSVHGN VEYDDFHWDD AAEAELQAFE AAYASASASA KRRRLPDWTS PSPSPSYHLH RSQNPVSSGS TPSWTLTPHT PQDNVRARRQ
101: QISFSGKIVY CRTPTEAEKA ATDILLKIER MKTPGQVSLG FDLEWRPFPR RGEPPCKVAV MQLCMEKTLC YVLHIAHSGV PPILKTLLED SSSIKVGICI
201: DNDARKMLND YNVCVQPLMD LSTLANVKLA SPKRWSLASL TEMITCKELP KPSNIRMGNW EADVLSKQQL QYAATDAYIS WYLYEALQTL PDYTIEAESV
301: KAQ

Best Arabidopsis Sequence Match ( AT4G13870.2 )
(BLAST)

001: MSSSNWIDDA FTEEELLAID AIEASYNFSR SSSSSSSAAP TVQATTSVHG HEEDPNQIPN NIRRQLPRSI TSSTSYKRFP LSRCRARNFP AMRFGGRILY
101: SKTATEVDKR AMQLIKVLDT KRDESGIAFV GLDIEWRPSF RKGVLPGKVA TVQICVDSNY CDVMHIFHSG IPQSLQHLIE DSTLVKVGIG IDGDSVKLFH
201: DYGVSIKDVE DLSDLANQKI GGDKKWGLAS LTETLVCKEL LKPNRIRLGN WEFYPLSKQQ LQYAATDAYA SWHLYKVLKD LPDAVSGS

Arabidopsis Description

WEXWerner Syndrome-like exonuclease [Source:UniProtKB/Swiss-Prot;Acc:Q84LH3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.