Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES03385 | Sorghum | cytosol, nucleus, plastid | 76.5 | 76.12 |
| Zm00001d011507_P001 | Maize | cytosol | 59.5 | 58.91 |
| TraesCS3A01G239500.1 | Wheat | nucleus | 56.0 | 56.0 |
| TraesCS3D01G239800.1 | Wheat | nucleus | 55.5 | 55.5 |
| VIT_08s0040g00710.t01 | Wine grape | cytosol | 52.0 | 50.0 |
| PGSC0003DMT400093830 | Potato | cytosol | 50.5 | 49.27 |
| Solyc10g078200.1.1 | Tomato | nucleus | 49.0 | 47.8 |
| Zm00001d043554_P001 | Maize | cytosol | 47.5 | 46.57 |
| Solyc08g078620.1.1 | Tomato | mitochondrion | 44.0 | 42.51 |
| Solyc01g103460.2.1 | Tomato | cytosol | 45.0 | 42.25 |
| PGSC0003DMT400064032 | Potato | nucleus | 45.0 | 41.86 |
| Zm00001d047288_P001 | Maize | nucleus | 41.5 | 41.09 |
| Zm00001d036734_P001 | Maize | nucleus | 55.0 | 40.89 |
| KRH00114 | Soybean | cytosol | 46.0 | 40.71 |
| KRH00116 | Soybean | cytosol | 42.5 | 40.28 |
| Solyc08g007350.1.1 | Tomato | cytosol | 47.0 | 40.0 |
| Solyc12g094540.1.1 | Tomato | cytosol | 40.5 | 39.71 |
| Solyc11g006480.1.1 | Tomato | nucleus | 35.0 | 39.55 |
| PGSC0003DMT400094103 | Potato | mitochondrion | 42.0 | 39.44 |
| Solyc12g042390.1.1 | Tomato | cytosol | 42.5 | 39.17 |
| KRH49260 | Soybean | cytosol, nucleus, peroxisome | 41.5 | 39.15 |
| PGSC0003DMT400075613 | Potato | nucleus | 43.0 | 39.09 |
| PGSC0003DMT400032474 | Potato | cytosol, nucleus, vacuole | 45.5 | 39.06 |
| KRH00115 | Soybean | nucleus | 41.5 | 38.97 |
| PGSC0003DMT400036459 | Potato | extracellular | 42.0 | 38.89 |
| PGSC0003DMT400032554 | Potato | cytosol | 47.0 | 37.3 |
| GSMUA_Achr1P12990_001 | Banana | plastid | 35.0 | 36.84 |
| Zm00001d009130_P001 | Maize | nucleus | 38.0 | 35.51 |
| KRH49255 | Soybean | nucleus | 42.0 | 35.29 |
| KRH00112 | Soybean | nucleus | 33.5 | 33.5 |
| Zm00001d018645_P001 | Maize | mitochondrion | 32.5 | 23.99 |
| Zm00001d011513_P001 | Maize | plastid | 47.0 | 21.56 |
| Zm00001d004468_P003 | Maize | nucleus | 27.5 | 18.15 |
| Zm00001d022094_P001 | Maize | nucleus | 32.5 | 15.4 |
| Zm00001d010107_P001 | Maize | nucleus | 31.5 | 6.12 |
Protein Annotations
| InterPro:3'-5'_exonuclease_dom | Gene3D:3.30.420.10 | MapMan:35.1 | UniProt:A0A1D6NGT3 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004518 | GO:GO:0004527 | GO:GO:0005488 | GO:GO:0006139 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008408 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0090305 |
| InterPro:IPR036397 | ProteinID:ONM39616.1 | PFAM:PF01612 | PANTHER:PTHR13620 | PANTHER:PTHR13620:SF34 | InterPro:RNaseH-like_sf |
| InterPro:RNaseH_sf | SMART:SM00474 | SUPFAM:SSF53098 | UniParc:UPI000220F484 | EnsemblPlantsGene:Zm00001d043985 | EnsemblPlants:Zm00001d043985_P001 |
| EnsemblPlants:Zm00001d043985_T001 | : | : | : | : | : |
Description
3-5 exonuclease/ nucleic acid binding protein
Coordinates
chr3:+:215637632..215638234
Molecular Weight (calculated)
22281.4 Da
IEP (calculated)
4.527
GRAVY (calculated)
-0.025
Length
200 amino acids
Sequence
(BLAST)
(BLAST)
001: MAATKVCNVR FEGNVITTTV TASGAAVESW LDEILSVHRR RLHKLVVGLD VEWRPSFSRA YSKTAILQLC VGRRCLIFQL LHADYVPNTL DEFLSDPDYT
101: FVGVGVAADV ERLENDYDLE VANAEDLAEL AAKEMGHPDL RNAGLQGIAR VVMDAHVEKP QWVRTGPWDA SSLSDEQIEY ATIDAFVSFE VGRMLLSGYY
101: FVGVGVAADV ERLENDYDLE VANAEDLAEL AAKEMGHPDL RNAGLQGIAR VVMDAHVEKP QWVRTGPWDA SSLSDEQIEY ATIDAFVSFE VGRMLLSGYY
001: MSSSNWIDDA FTEEELLAID AIEASYNFSR SSSSSSSAAP TVQATTSVHG HEEDPNQIPN NIRRQLPRSI TSSTSYKRFP LSRCRARNFP AMRFGGRILY
101: SKTATEVDKR AMQLIKVLDT KRDESGIAFV GLDIEWRPSF RKGVLPGKVA TVQICVDSNY CDVMHIFHSG IPQSLQHLIE DSTLVKVGIG IDGDSVKLFH
201: DYGVSIKDVE DLSDLANQKI GGDKKWGLAS LTETLVCKEL LKPNRIRLGN WEFYPLSKQQ LQYAATDAYA SWHLYKVLKD LPDAVSGS
101: SKTATEVDKR AMQLIKVLDT KRDESGIAFV GLDIEWRPSF RKGVLPGKVA TVQICVDSNY CDVMHIFHSG IPQSLQHLIE DSTLVKVGIG IDGDSVKLFH
201: DYGVSIKDVE DLSDLANQKI GGDKKWGLAS LTETLVCKEL LKPNRIRLGN WEFYPLSKQQ LQYAATDAYA SWHLYKVLKD LPDAVSGS
Arabidopsis Description
WEXWerner Syndrome-like exonuclease [Source:UniProtKB/Swiss-Prot;Acc:Q84LH3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.