Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G239500.1 | Wheat | nucleus | 95.5 | 95.5 |
| TraesCS3D01G239900.1 | Wheat | cytosol, nucleus, plastid | 60.0 | 60.91 |
| Zm00001d043985_P001 | Maize | cytosol, nucleus, plastid | 55.5 | 55.5 |
| TraesCS7D01G297900.1 | Wheat | cytosol | 47.5 | 50.8 |
| EES03385 | Sorghum | cytosol, nucleus, plastid | 51.0 | 50.75 |
| PGSC0003DMT400093830 | Potato | cytosol | 44.5 | 43.41 |
| TraesCS3D01G278900.1 | Wheat | nucleus | 45.0 | 43.27 |
| Solyc08g078620.1.1 | Tomato | mitochondrion | 44.0 | 42.51 |
| Solyc10g078200.1.1 | Tomato | nucleus | 43.5 | 42.44 |
| Solyc12g094540.1.1 | Tomato | cytosol | 42.5 | 41.67 |
| VIT_08s0040g00710.t01 | Wine grape | cytosol | 43.0 | 41.35 |
| KRH49260 | Soybean | cytosol, nucleus, peroxisome | 43.5 | 41.04 |
| PGSC0003DMT400075613 | Potato | nucleus | 45.0 | 40.91 |
| KRH00115 | Soybean | nucleus | 43.0 | 40.38 |
| TraesCS3D01G118000.1 | Wheat | nucleus, peroxisome, plastid | 40.0 | 40.0 |
| KRH00114 | Soybean | cytosol | 44.0 | 38.94 |
| KRH00116 | Soybean | cytosol | 41.0 | 38.86 |
| PGSC0003DMT400094103 | Potato | mitochondrion | 40.5 | 38.03 |
| Solyc12g042390.1.1 | Tomato | cytosol | 41.0 | 37.79 |
| Solyc11g006480.1.1 | Tomato | nucleus | 32.5 | 36.72 |
| Solyc01g103460.2.1 | Tomato | cytosol | 39.0 | 36.62 |
| TraesCS3D01G239600.1 | Wheat | cytosol | 43.0 | 36.44 |
| PGSC0003DMT400064032 | Potato | nucleus | 39.0 | 36.28 |
| KRH49255 | Soybean | nucleus | 43.0 | 36.13 |
| PGSC0003DMT400032474 | Potato | cytosol, nucleus, vacuole | 40.5 | 34.76 |
| PGSC0003DMT400036459 | Potato | extracellular | 37.5 | 34.72 |
| Solyc08g007350.1.1 | Tomato | cytosol | 39.5 | 33.62 |
| GSMUA_Achr1P12990_001 | Banana | plastid | 31.5 | 33.16 |
| PGSC0003DMT400032554 | Potato | cytosol | 41.0 | 32.54 |
| KRH00112 | Soybean | nucleus | 30.5 | 30.5 |
| TraesCS1D01G315900.1 | Wheat | mitochondrion | 29.5 | 29.65 |
| Zm00001d047288_P001 | Maize | nucleus | 27.0 | 26.73 |
| Zm00001d036734_P001 | Maize | nucleus | 34.0 | 25.28 |
| TraesCS2D01G012000.1 | Wheat | nucleus | 28.0 | 18.79 |
| TraesCS2D01G261700.1 | Wheat | cytosol, mitochondrion, nucleus | 29.5 | 10.26 |
Protein Annotations
| InterPro:3'-5'_exonuclease_dom | Gene3D:3.30.420.10 | MapMan:35.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003824 | GO:GO:0004518 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008408 | GO:GO:0009987 | GO:GO:0016787 | InterPro:IPR036397 | PFAM:PF01612 | PANTHER:PTHR13620 |
| PANTHER:PTHR13620:SF34 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | SMART:SM00474 | SUPFAM:SSF53098 | EnsemblPlantsGene:TraesCS3D01G239800 |
| EnsemblPlants:TraesCS3D01G239800.1 | TIGR:cd06141 | : | : | : | : |
Description
No Description!
Coordinates
chr3D:-:332237550..332238348
Molecular Weight (calculated)
22168.3 Da
IEP (calculated)
3.942
GRAVY (calculated)
0.065
Length
200 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDTYVADVA FGEEVITTTV TSSGAAVEDW VEEVYSMYAG CPNQILVGLD VEWRPSYSRV QNPAALLQLC IDQRCLIFQL LHADYIPDAL SVFLMDNQFW
101: FVGVGVAADA NRLAQDYDLQ VRNLEDLRGV AAEEMGIPEL RQAGLKDLAP QVLGVTMQKP RRITMGPWDA CCLSDEQIHY ACTDAYVSSQ IGLELFTGNY
101: FVGVGVAADA NRLAQDYDLQ VRNLEDLRGV AAEEMGIPEL RQAGLKDLAP QVLGVTMQKP RRITMGPWDA CCLSDEQIHY ACTDAYVSSQ IGLELFTGNY
001: MSSSNWIDDA FTEEELLAID AIEASYNFSR SSSSSSSAAP TVQATTSVHG HEEDPNQIPN NIRRQLPRSI TSSTSYKRFP LSRCRARNFP AMRFGGRILY
101: SKTATEVDKR AMQLIKVLDT KRDESGIAFV GLDIEWRPSF RKGVLPGKVA TVQICVDSNY CDVMHIFHSG IPQSLQHLIE DSTLVKVGIG IDGDSVKLFH
201: DYGVSIKDVE DLSDLANQKI GGDKKWGLAS LTETLVCKEL LKPNRIRLGN WEFYPLSKQQ LQYAATDAYA SWHLYKDLPD AVSGS
101: SKTATEVDKR AMQLIKVLDT KRDESGIAFV GLDIEWRPSF RKGVLPGKVA TVQICVDSNY CDVMHIFHSG IPQSLQHLIE DSTLVKVGIG IDGDSVKLFH
201: DYGVSIKDVE DLSDLANQKI GGDKKWGLAS LTETLVCKEL LKPNRIRLGN WEFYPLSKQQ LQYAATDAYA SWHLYKDLPD AVSGS
Arabidopsis Description
WEXWerner Syndrome-like exonuclease [Source:UniProtKB/Swiss-Prot;Acc:Q84LH3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.