Factsheet for TraesCS1D01G315900.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G327900.1	Wheat	mitochondrion	82.91	82.91
TraesCS1A01G315700.1	Wheat	mitochondrion	82.41	82.41
Os07t0112300-00	Rice	mitochondrion	29.65	50.86
EES02313	Sorghum	mitochondrion, plastid	56.28	46.28
Zm00001d018645_P001	Maize	mitochondrion	53.77	39.48
OQU88309	Sorghum	mitochondrion	47.24	38.52
KRH36952	Soybean	cytosol	34.17	33.01
TraesCS3D01G239900.1	Wheat	cytosol, nucleus, plastid	31.66	31.98
TraesCS3D01G118000.1	Wheat	nucleus, peroxisome, plastid	31.16	31.0
TraesCS3D01G278900.1	Wheat	nucleus	32.16	30.77
TraesCS7D01G297900.1	Wheat	cytosol	28.14	29.95
TraesCS3D01G239800.1	Wheat	nucleus	29.65	29.5
Bra038723.1-P	Field mustard	cytosol	31.66	28.64
CDY50341	Canola	cytosol	31.66	28.64
KRH11911	Soybean	nucleus	32.66	28.51
Bra038717.1-P	Field mustard	cytosol	31.66	28.12
CDY50548	Canola	cytosol	31.16	27.68
Bra038722.1-P	Field mustard	cytosol	30.15	27.65
AT3G12470.1	Thale cress	mitochondrion	29.65	26.82
AT3G12460.1	Thale cress	cytosol, nucleus, plastid	31.66	26.03
AT2G36110.1	Thale cress	mitochondrion	31.16	25.94
GSMUA_Achr1P12990_001	Banana	plastid	24.12	25.26
AT3G12410.1	Thale cress	plastid	29.15	25.22
AT3G12430.1	Thale cress	cytosol, nucleus, plastid	30.15	25.21
CDY50340	Canola	nucleus	20.6	24.85
CDY71159	Canola	cytosol	31.66	24.61
AT3G12420.1	Thale cress	cytosol	21.61	23.24
Bra038721.1-P	Field mustard	plastid	21.11	22.95
CDY50545	Canola	cytosol, nucleus, plastid	25.63	21.98
TraesCS3D01G239600.1	Wheat	cytosol	25.63	21.61
AT3G12440.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	32.66	18.41
CDY50339	Canola	plastid	16.08	17.88
TraesCS2D01G261700.1	Wheat	cytosol, mitochondrion, nucleus	46.73	16.17
TraesCS2D01G012000.1	Wheat	nucleus	23.12	15.44

Protein Annotations

InterPro:3'-5'_exonuclease_dom	Gene3D:3.30.420.10	MapMan:35.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824
GO:GO:0004518	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008408
GO:GO:0009987	GO:GO:0016787	InterPro:IPR036397	PFAM:PF01612	PANTHER:PTHR13620	PANTHER:PTHR13620:SF8
InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	SUPFAM:SSF53098	EnsemblPlantsGene:TraesCS1D01G315900	EnsemblPlants:TraesCS1D01G315900.1	TIGR:cd06141

Description

No Description!

Coordinates

chr1D:+:411058981..411059580

Molecular Weight (calculated)

22050.9 Da

IEP (calculated)

11.406

GRAVY (calculated)

-0.216

Length

199 amino acids

Sequence
(BLAST)

001: MKRRTQEVHV AGRTAHATVT SHPAVARRWV HTTRWRNGGR LRSSAGLIVG MGVQWTPPFR RLPDGAEPRP ATLQLCCGRR CLVFQIGKAG AGSVPLILQR
101: FLEDARVDFF GYNVLSDCRK LSAHYGLRVA CPRELRLVTG MGNASMESMA EQLLGWRGVK KSQRVGVSNW DVSTLSKRQV RYAASDALVS YCLGAKCLK

Best Arabidopsis Sequence Match ( AT2G36110.1 )
(BLAST)

001: MARIRRRIQK RHIHENRYID FFGERLIVTV THTTSTIRRW IHSIRFFSRL RSSHPLVVGL DVQWTPGGSD PPPDILQLCV GNRCLIIQLS HCKRIPEVLR
101: SFLEDETITF VGVWNSQDQG KLERFRHQLE IWRLLDIRHY LPTRLLNSSF EKIVEECLGY KGVRKDKEIC MSNWGARSLS HDQIVQASDD VYVCCKLGVK
201: ECIWKERSNV KERIWKESSN VKEHIWKESS KLYFVGVCF

Arabidopsis Description

Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SIH3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.