Factsheet for AT3G12430.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT3G12460.1	Thale cress	cytosol, nucleus, plastid	81.51	80.17
Bra038717.1-P	Field mustard	cytosol	57.14	60.71
CDY50548	Canola	cytosol	57.14	60.71
AT3G12410.1	Thale cress	plastid	58.4	60.43
AT3G12470.1	Thale cress	mitochondrion	50.84	55.0
AT3G12420.1	Thale cress	cytosol	41.6	53.51
CDY71159	Canola	cytosol	54.62	50.78
AT3G12440.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	70.17	47.31
AT2G36110.1	Thale cress	mitochondrion	46.64	46.44
KRH36952	Soybean	cytosol	34.03	39.32
KRH11911	Soybean	nucleus	34.03	35.53
Os07t0112300-00	Rice	mitochondrion	15.55	31.9
TraesCS1A01G315700.1	Wheat	mitochondrion	26.47	31.66
TraesCS1D01G315900.1	Wheat	mitochondrion	25.21	30.15
EES02313	Sorghum	mitochondrion, plastid	27.73	27.27
GSMUA_Achr1P12990_001	Banana	plastid	18.49	23.16
Zm00001d018645_P001	Maize	mitochondrion	25.21	22.14
OQU88309	Sorghum	mitochondrion	21.43	20.9
AT4G13870.2	Thale cress	nucleus	18.49	15.28
Os07t0112400-00	Rice	mitochondrion	30.25	14.52
EER95744	Sorghum	nucleus	28.15	13.76
TraesCS2A01G262300.1	Wheat	cytosol, mitochondrion, nucleus	28.99	11.77
TraesCS2D01G261700.1	Wheat	cytosol, mitochondrion, nucleus	27.73	11.48
AT4G13885.1	Thale cress	nucleus	11.34	10.27

Protein Annotations

InterPro:3'-5'_exonuclease_dom	Gene3D:3.30.420.10	MapMan:35.2	EntrezGene:820422	UniProt:A0A178VDL3	ProteinID:AAG51014.1
ProteinID:AEE75196.1	ArrayExpress:AT3G12430	EnsemblPlantsGene:AT3G12430	RefSeq:AT3G12430	TAIR:AT3G12430	RefSeq:AT3G12430-TAIR-G
EnsemblPlants:AT3G12430.1	TAIR:AT3G12430.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004518
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008408	GO:GO:0009987	GO:GO:0016740
GO:GO:0016787	GO:GO:0090305	InterPro:IPR036397	RefSeq:NP_187849.1	ProteinID:OAP02982.1	PANTHER:PTHR13620
PANTHER:PTHR13620:SF8	UniProt:Q9C7A5	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	SMART:SM00474	SUPFAM:SSF53098
UniParc:UPI00000A074E	SEG:seg	:	:	:	:

Description

Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9C7A5]

Coordinates

chr3:-:3949405..3950430

Molecular Weight (calculated)

27498.9 Da

IEP (calculated)

8.962

GRAVY (calculated)

-0.280

Length

238 amino acids

Sequence
(BLAST)

001: MAPTIRTIGT YATQQRYLVD FFGEEFIVIV TPDPSVIGQW IHDVLSHNRF SSHPLVVGVG VQWTPSSYYS ASSPVRYRSD SPPVRYRSDS PRVRRRFDPP
101: ADTLQLCVGN RCIIIQLSHC ERVPQVLRNF LADRDYTFVG IWNSQDAGKL KRSKHELEIA VLLDLRKFVS DSSGRTMKRC SFEKIVEENL GHSGVRLDRK
201: VSRSDWRVYD LRYVQILQAS IDVYACCKLA ILDHLWEY

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.