Factsheet for AT3G12460.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT3G12430.1	Thale cress	cytosol, nucleus, plastid	80.17	81.51
AT3G12410.1	Thale cress	plastid	60.33	63.48
Bra038717.1-P	Field mustard	cytosol	54.55	58.93
CDY50548	Canola	cytosol	54.55	58.93
AT3G12470.1	Thale cress	mitochondrion	51.24	56.36
AT3G12420.1	Thale cress	cytosol	41.74	54.59
AT2G36110.1	Thale cress	mitochondrion	49.59	50.21
CDY71159	Canola	cytosol	52.07	49.22
AT3G12440.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	68.59	47.03
KRH36952	Soybean	cytosol	33.47	39.32
KRH11911	Soybean	nucleus	35.95	38.16
Os07t0112300-00	Rice	mitochondrion	15.7	32.76
TraesCS1A01G315700.1	Wheat	mitochondrion	26.86	32.66
TraesCS1D01G315900.1	Wheat	mitochondrion	26.03	31.66
EES02313	Sorghum	mitochondrion, plastid	27.69	27.69
GSMUA_Achr1P12990_001	Banana	plastid	19.42	24.74
Zm00001d018645_P001	Maize	mitochondrion	25.62	22.88
OQU88309	Sorghum	mitochondrion	21.49	21.31
AT4G13870.2	Thale cress	nucleus	19.01	15.97
Os07t0112400-00	Rice	mitochondrion	32.23	15.73
EER95744	Sorghum	nucleus	30.58	15.2
TraesCS2A01G262300.1	Wheat	cytosol, mitochondrion, nucleus	31.82	13.14
TraesCS2D01G261700.1	Wheat	cytosol, mitochondrion, nucleus	30.99	13.04
AT4G13885.1	Thale cress	nucleus	11.57	10.65

Protein Annotations

Gene3D:3.30.420.10	MapMan:35.2	EntrezGene:820425	UniProt:A0A178VA96	ProteinID:AAG51003.1	ProteinID:AEE75198.1
ArrayExpress:AT3G12460	EnsemblPlantsGene:AT3G12460	RefSeq:AT3G12460	TAIR:AT3G12460	RefSeq:AT3G12460-TAIR-G	EnsemblPlants:AT3G12460.1
TAIR:AT3G12460.1	ProteinID:BAB03153.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004518
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008408	GO:GO:0009987	GO:GO:0016740
GO:GO:0016787	GO:GO:0090305	InterPro:IPR036397	RefSeq:NP_187852.1	ProteinID:OAP02315.1	PO:PO:0000037
PO:PO:0000191	PO:PO:0000293	PO:PO:0001078	PO:PO:0001081	PO:PO:0004507	PO:PO:0007611
PO:PO:0007616	PO:PO:0009009	PO:PO:0009010	PO:PO:0009029	PO:PO:0009031	PO:PO:0009032
PO:PO:0009046	PO:PO:0009052	PO:PO:0025022	PANTHER:PTHR13620	PANTHER:PTHR13620:SF8	UniProt:Q9LHG2
InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	SUPFAM:SSF53098	UniParc:UPI00000A44D3	SEG:seg	:

Description

Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LHG2]

Coordinates

chr3:-:3954514..3955550

Molecular Weight (calculated)

27713.5 Da

IEP (calculated)

4.944

GRAVY (calculated)

-0.360

Length

242 amino acids

Sequence
(BLAST)

001: MAPTIRTIGS YATQQRYSVD FFGEELFVTV TPDPSVIGQW IHDVFFHNRL SSHPLVVGVG VQWTPSGYHP ASPPVSYRSD SSPDSYRSDS PPVFYSSDPP
101: ADTLQLCVGN RCIIIQLRYC ERVPQVLRNF LADRDNTFVG IWNSQDAGKL ERSRHQLEIA ELMDLREFVS DSSGRRSMYN YSLEKIVEEN LGYPGVRLDR
201: EVSMSDWRVY NLSYDQILQA SIDVYACCSL AILDHLWEEK NR

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.