Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 1
- mitochondrion 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G12410.1 | Thale cress | plastid | 57.73 | 55.22 |
| AT3G12460.1 | Thale cress | cytosol, nucleus, plastid | 56.36 | 51.24 |
| AT3G12430.1 | Thale cress | cytosol, nucleus, plastid | 55.0 | 50.84 |
| AT2G36110.1 | Thale cress | mitochondrion | 53.18 | 48.95 |
| AT3G12420.1 | Thale cress | cytosol | 34.09 | 40.54 |
| KRH36952 | Soybean | cytosol | 35.45 | 37.86 |
| KRH11911 | Soybean | nucleus | 36.82 | 35.53 |
| AT3G12440.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 55.0 | 34.28 |
| TraesCS1D01G315900.1 | Wheat | mitochondrion | 26.82 | 29.65 |
| TraesCS1A01G315700.1 | Wheat | mitochondrion | 26.82 | 29.65 |
| Os07t0112300-00 | Rice | mitochondrion | 15.0 | 28.45 |
| EES02313 | Sorghum | mitochondrion, plastid | 29.09 | 26.45 |
| GSMUA_Achr1P12990_001 | Banana | plastid | 19.09 | 22.11 |
| Zm00001d018645_P001 | Maize | mitochondrion | 25.91 | 21.03 |
| OQU88309 | Sorghum | mitochondrion | 21.82 | 19.67 |
| Os07t0112400-00 | Rice | mitochondrion | 32.27 | 14.31 |
| AT4G13870.2 | Thale cress | nucleus | 17.73 | 13.54 |
| EER95744 | Sorghum | nucleus | 29.55 | 13.35 |
| TraesCS2A01G262300.1 | Wheat | cytosol, mitochondrion, nucleus | 30.91 | 11.6 |
| TraesCS2D01G261700.1 | Wheat | cytosol, mitochondrion, nucleus | 29.55 | 11.3 |
| AT4G13885.1 | Thale cress | nucleus | 12.27 | 10.27 |
Protein Annotations
| Gene3D:3.30.420.10 | MapMan:35.2 | EntrezGene:820426 | ProteinID:AAG51036.1 | ProteinID:AEE75199.1 | ArrayExpress:AT3G12470 |
| EnsemblPlantsGene:AT3G12470 | RefSeq:AT3G12470 | TAIR:AT3G12470 | RefSeq:AT3G12470-TAIR-G | EnsemblPlants:AT3G12470.1 | TAIR:AT3G12470.1 |
| ProteinID:BAB03154.1 | EMBL:BT025648 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004518 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 |
| GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008408 | GO:GO:0009987 | GO:GO:0016740 |
| GO:GO:0016787 | GO:GO:0090305 | InterPro:IPR036397 | RefSeq:NP_566424.1 | PO:PO:0000084 | PO:PO:0001078 |
| PO:PO:0009010 | PANTHER:PTHR13620 | PANTHER:PTHR13620:SF8 | UniProt:Q9LHG1 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf |
| SUPFAM:SSF53098 | UniParc:UPI00000A32EB | SEG:seg | : | : | : |
Description
At3g12470 [Source:UniProtKB/TrEMBL;Acc:Q9LHG1]
Coordinates
chr3:-:3955961..3956827
Molecular Weight (calculated)
25358.1 Da
IEP (calculated)
10.236
GRAVY (calculated)
-0.133
Length
220 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPTIKRIRS FRTHQKHFVD FFGDDLIVTV TPTASVIRRW IRSVRSYNRN HSVHPLVVGI GVQWRPDSSD PDPPPKTLQL CVGSRCLIIQ LGYNYGLPKV
101: LRTFLADPKT TFVGVWNGQD QKKLEKCRHR VEIGKLLDIR MFVRDSRGAR MCFCSFEQIV KERLGRVGVR LDPAICMSDW GVYNLNHYQV LQASIESYVC
201: FKLAVEERLW NLKVAANLVI
101: LRTFLADPKT TFVGVWNGQD QKKLEKCRHR VEIGKLLDIR MFVRDSRGAR MCFCSFEQIV KERLGRVGVR LDPAICMSDW GVYNLNHYQV LQASIESYVC
201: FKLAVEERLW NLKVAANLVI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.