Factsheet for AT4G13870.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra032748.1-P	Field mustard	nucleus	78.47	81.59
CDY01171	Canola	nucleus	77.43	81.09
CDY50420	Canola	nucleus	77.08	80.73
KRH31568	Soybean	mitochondrion	33.33	47.29
KRG97350	Soybean	nucleus	46.18	45.55
HORVU2Hr1G001690.1	Barley	plastid	35.07	43.35
VIT_05s0029g00410.t01	Wine grape	nucleus	45.14	43.19
PGSC0003DMT400053073	Potato	nucleus	44.44	42.52
Solyc09g092340.2.1	Tomato	nucleus	43.75	42.0
Os04t0129200-00	Rice	nucleus	41.32	39.93
TraesCS2B01G010000.1	Wheat	nucleus	39.24	38.31
TraesCS2A01G011600.1	Wheat	nucleus	39.24	38.18
AT4G13885.1	Thale cress	nucleus	34.38	37.64
TraesCS2D01G012000.1	Wheat	nucleus	38.89	37.58
Zm00001d004468_P003	Maize	nucleus	38.89	36.96
EES11779	Sorghum	nucleus	38.19	35.37
GSMUA_AchrUn_...	Banana	nucleus	32.64	32.75
AT3G12460.1	Thale cress	cytosol, nucleus, plastid	15.97	19.01
AT3G12430.1	Thale cress	cytosol, nucleus, plastid	15.28	18.49
AT2G36110.1	Thale cress	mitochondrion	15.28	18.41
AT3G12470.1	Thale cress	mitochondrion	13.54	17.73
AT3G12410.1	Thale cress	plastid	13.89	17.39
AT3G12420.1	Thale cress	cytosol	10.42	16.22
AT3G12440.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	15.62	12.75

Protein Annotations

InterPro:3'-5'_exonuclease_dom	Gene3D:3.30.420.10	MapMan:35.1	EntrezGene:827021	ProteinID:AAS45430.1	ProteinID:AEE83338.1
ProteinID:AEE83339.1	EMBL:AF531179	EMBL:AJ404476	ArrayExpress:AT4G13870	EnsemblPlantsGene:AT4G13870	RefSeq:AT4G13870
TAIR:AT4G13870	RefSeq:AT4G13870-TAIR-G	EnsemblPlants:AT4G13870.2	TAIR:AT4G13870.2	Unigene:At.2728	EMBL:BT010908
ProteinID:CAB36851.1	ProteinID:CAB78429.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824
GO:GO:0004518	GO:GO:0004527	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008408
GO:GO:0009987	GO:GO:0016787	GO:GO:0046872	GO:GO:0090305	InterPro:IPR036397	RefSeq:NP_193123.2
RefSeq:NP_974543.1	PFAM:PF01612	PO:PO:0000293	PANTHER:PTHR13620	PANTHER:PTHR13620:SF19	UniProt:Q84LH3
InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	SMART:SM00474	SUPFAM:SSF53098	UniParc:UPI0000003B0C	Symbol:WRNEXO
SEG:seg	:	:	:	:	:

Description

WEXWerner Syndrome-like exonuclease [Source:UniProtKB/Swiss-Prot;Acc:Q84LH3]

Coordinates

chr4:-:8023237..8025592

Molecular Weight (calculated)

32092.0 Da

IEP (calculated)

7.179

GRAVY (calculated)

-0.339

Length

288 amino acids

Sequence
(BLAST)

001: MSSSNWIDDA FTEEELLAID AIEASYNFSR SSSSSSSAAP TVQATTSVHG HEEDPNQIPN NIRRQLPRSI TSSTSYKRFP LSRCRARNFP AMRFGGRILY
101: SKTATEVDKR AMQLIKVLDT KRDESGIAFV GLDIEWRPSF RKGVLPGKVA TVQICVDSNY CDVMHIFHSG IPQSLQHLIE DSTLVKVGIG IDGDSVKLFH
201: DYGVSIKDVE DLSDLANQKI GGDKKWGLAS LTETLVCKEL LKPNRIRLGN WEFYPLSKQQ LQYAATDAYA SWHLYKVLKD LPDAVSGS

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.