Factsheet for GSMUA_AchrUn_randomP20580_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G001690.1	Barley	plastid	37.98	46.78
Os04t0129200-00	Rice	nucleus	44.6	42.95
TraesCS2A01G011600.1	Wheat	nucleus	43.21	41.89
TraesCS2B01G010000.1	Wheat	nucleus	42.51	41.36
TraesCS2D01G012000.1	Wheat	nucleus	42.86	41.28
Zm00001d004468_P003	Maize	nucleus	42.51	40.26
EES11779	Sorghum	nucleus	42.86	39.55
PGSC0003DMT400053073	Potato	nucleus	40.07	38.21
Solyc09g092340.2.1	Tomato	nucleus	39.72	38.0
Bra032748.1-P	Field mustard	nucleus	34.15	35.38
CDY01171	Canola	nucleus	33.8	35.27
CDY50420	Canola	nucleus	33.45	34.91
KRG97350	Soybean	nucleus	34.49	33.9
AT4G13870.2	Thale cress	nucleus	32.75	32.64
KRH31568	Soybean	mitochondrion	23.0	32.51
VIT_05s0029g00410.t01	Wine grape	nucleus	31.36	29.9
GSMUA_Achr1P12990_001	Banana	plastid	14.29	21.58
AT4G13885.1	Thale cress	nucleus	14.29	15.59

Protein Annotations

InterPro:3'-5'_exonuclease_dom	Gene3D:3.30.420.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824
GO:GO:0004518	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008408
GO:GO:0009987	GO:GO:0016787	GO:GO:0090305	EnsemblPlantsGene:GSMUA_AchrUn_randomG20580_001	EnsemblPlants:GSMUA_AchrUn_randomP20580_001	EnsemblPlants:GSMUA_AchrUn_randomT20580_001
InterPro:IPR036397	UniProt:M0UAW7	PFAM:PF01612	PANTHER:PTHR13620	PANTHER:PTHR13620:SF19	InterPro:RNaseH-like_sf
InterPro:RNaseH_sf	SUPFAM:SSF53098	UniParc:UPI0002952C51	:	:	:

Description

Putative Werner Syndrome-like exonuclease [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG20580_001]

Coordinates

chrchrUn_random:+:99573560..99578748

Molecular Weight (calculated)

32087.6 Da

IEP (calculated)

8.048

GRAVY (calculated)

-0.350

Length

287 amino acids

Sequence
(BLAST)

001: MEKDGDSFLD WDWDLVAEEE LRAIEAVYYS SAKKRRISSD LDADDPAPLH SRPSGRRLPD WGRADATESQ CHGGHGGGVA TAIADRPPSS CPTNGAWRVS
101: PLRCPGNFKV RYPTMAYRGS IIYCRTAPEV EQASMELLNK IRSMKQCMDH VSLGFDIEWR PVFKRGEAPR KAAVMQICLE NARCYVMHII HSGIPPGLKC
201: LLEDTVSVKV GVCIANDAWK MTNDYNVCVE PLEDLSSLAN LKLGGVPKRW SLASLTEMIT CKQVLGSNHR MKYRRITRVQ LGIYLSD

Best Arabidopsis Sequence Match ( AT4G13870.2 )
(BLAST)

001: MSSSNWIDDA FTEEELLAID AIEASYNFSR SSSSSSSAAP TVQATTSVHG HEEDPNQIPN NIRRQLPRSI TSSTSYKRFP LSRCRARNFP AMRFGGRILY
101: SKTATEVDKR AMQLIKVLDT KRDESGIAFV GLDIEWRPSF RKGVLPGKVA TVQICVDSNY CDVMHIFHSG IPQSLQHLIE DSTLVKVGIG IDGDSVKLFH
201: DYGVSIKDVE DLSDLANQKI GGDKKWGLAS LTETLVCKEL LKPNRIRLGN WEFYPLSKQQ LQYAATDAYA SWHLYKVLKD LPDAVSGS

Arabidopsis Description

WEXWerner Syndrome-like exonuclease [Source:UniProtKB/Swiss-Prot;Acc:Q84LH3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.