Factsheet for Bra032748.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY01171	Canola	nucleus	98.19	98.91
AT4G13870.2	Thale cress	nucleus	81.59	78.47
KRH31568	Soybean	mitochondrion	35.74	48.77
KRG97350	Soybean	nucleus	49.1	46.58
PGSC0003DMT400053073	Potato	nucleus	48.01	44.19
Solyc09g092340.2.1	Tomato	nucleus	47.29	43.67
HORVU2Hr1G001690.1	Barley	plastid	36.1	42.92
VIT_05s0029g00410.t01	Wine grape	nucleus	45.85	42.19
Os04t0129200-00	Rice	nucleus	41.88	38.93
TraesCS2B01G010000.1	Wheat	nucleus	39.71	37.29
TraesCS2A01G011600.1	Wheat	nucleus	39.71	37.16
Zm00001d004468_P003	Maize	nucleus	40.43	36.96
TraesCS2D01G012000.1	Wheat	nucleus	39.35	36.58
AT4G13885.1	Thale cress	nucleus	33.94	35.74
EES11779	Sorghum	nucleus	40.07	35.69
GSMUA_AchrUn_...	Banana	nucleus	35.38	34.15
Bra038722.1-P	Field mustard	cytosol	15.88	20.28
Bra038723.1-P	Field mustard	cytosol	15.52	19.55
Bra038717.1-P	Field mustard	cytosol	15.52	19.2
Bra038721.1-P	Field mustard	plastid	10.11	15.3

Protein Annotations

InterPro:3'-5'_exonuclease_dom	Gene3D:3.30.420.10	MapMan:35.1	EnsemblPlantsGene:Bra032748	EnsemblPlants:Bra032748.1	EnsemblPlants:Bra032748.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004518	GO:GO:0005488	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0008408	GO:GO:0009987	GO:GO:0016787	GO:GO:0090305
InterPro:IPR036397	UniProt:M4EVB5	PFAM:PF01612	PANTHER:PTHR13620	PANTHER:PTHR13620:SF19	InterPro:RNaseH-like_sf
InterPro:RNaseH_sf	SMART:SM00474	SUPFAM:SSF53098	UniParc:UPI0002543C27	SEG:seg	:

Description

AT4G13870 (E=2e-114) WRNEXO | WRNEXO (WERNER SYNDROME-LIKE EXONUCLEASE); 3'-5' exonuclease/ nucleic acid binding / protein binding

Coordinates

chrA04:+:4960049..4961817

Molecular Weight (calculated)

30749.6 Da

IEP (calculated)

8.333

GRAVY (calculated)

-0.364

Length

277 amino acids

Sequence
(BLAST)

001: MSSSWGDEEE FTEEDLLAIE AIEASHLSQS SSSSSSSSTV RPVSSNPNQI RRQLPRSITS PTPSKRFPLS RCRAKNFPAM RFGGRILYSK TASEVDRRAM
101: QLLKVLDTKR DHSGRAFIGF DIEWRPSFRK GVLPGKAAVV QICVDNSYCD VMQIIHSGIP QSLQHLIEDS SLVKVGIGID GDSVKLFHDH GVSIKDVEDL
201: SDLANKKIGG GLKKWSLASL TETLVCKELL KPNRIRLGNW EVRPLSKEQL QYAATDAYAS WHLYHVLKDL PDAVDGS

Best Arabidopsis Sequence Match ( AT4G13870.2 )
(BLAST)

001: MSSSNWIDDA FTEEELLAID AIEASYNFSR SSSSSSSAAP TVQATTSVHG HEEDPNQIPN NIRRQLPRSI TSSTSYKRFP LSRCRARNFP AMRFGGRILY
101: SKTATEVDKR AMQLIKVLDT KRDESGIAFV GLDIEWRPSF RKGVLPGKVA TVQICVDSNY CDVMHIFHSG IPQSLQHLIE DSTLVKVGIG IDGDSVKLFH
201: DYGVSIKDVE DLSDLANQKI GGDKKWGLAS LTETLVCKEL LKPNRIRLGN WEFYPLSKQQ LQYAATDAYA SWHLYKVLKD LPDAVSGS

Arabidopsis Description

WEXWerner Syndrome-like exonuclease [Source:UniProtKB/Swiss-Prot;Acc:Q84LH3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.