Factsheet for HORVU2Hr1G001690.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
TargetP:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G010000.1	Wheat	nucleus	94.85	74.92
TraesCS2A01G011600.1	Wheat	nucleus	93.99	73.99
TraesCS2D01G012000.1	Wheat	nucleus	92.7	72.48
Os04t0129200-00	Rice	nucleus	73.39	57.38
Zm00001d004468_P003	Maize	nucleus	72.1	55.45
EES11779	Sorghum	nucleus	72.1	54.02
KRH31568	Soybean	mitochondrion	36.48	41.87
Solyc09g092340.2.1	Tomato	nucleus	50.64	39.33
PGSC0003DMT400053073	Potato	nucleus	49.36	38.21
GSMUA_AchrUn_...	Banana	nucleus	46.78	37.98
CDY50420	Canola	nucleus	42.92	36.36
CDY01171	Canola	nucleus	42.92	36.36
Bra032748.1-P	Field mustard	nucleus	42.92	36.1
AT4G13870.2	Thale cress	nucleus	43.35	35.07
KRG97350	Soybean	nucleus	43.35	34.59
VIT_05s0029g00410.t01	Wine grape	nucleus	43.35	33.55
HORVU7Hr1G098080.1	Barley	nucleus	21.46	25.38
HORVU3Hr1G021110.1	Barley	nucleus	21.46	25.38
HORVU7Hr1G071770.1	Barley	cytosol	22.75	25.0
HORVU3Hr1G069990.1	Barley	nucleus	24.03	24.45
HORVU0Hr1G006750.1	Barley	nucleus	20.6	23.76
AT4G13885.1	Thale cress	nucleus	25.75	22.81

Protein Annotations

InterPro:3'-5'_exonuclease_dom	Gene3D:3.30.420.10	MapMan:35.1	UniProt:A0A287GW59	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0004518	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0008408	GO:GO:0009987	GO:GO:0016787	GO:GO:0090305	EnsemblPlantsGene:HORVU2Hr1G001690	EnsemblPlants:HORVU2Hr1G001690.1
InterPro:IPR036397	PFAM:PF01612	PANTHER:PTHR13620	PANTHER:PTHR13620:SF19	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf
SMART:SM00474	SUPFAM:SSF53098	UniParc:UPI000B46A2C4	SEG:seg	:	:

Description

No Description!

Coordinates

chrchr2H:+:3580668..3583565

Molecular Weight (calculated)

25873.5 Da

IEP (calculated)

8.638

GRAVY (calculated)

-0.163

Length

233 amino acids

Sequence
(BLAST)

001: XXVRAAASAS SPSSVLSPPT CQGSVKARYQ QVAFRGKIVY CRTATEVDKA TREIMRKIES MKASGPVSLG FDLEWKPFPR RGEPPCKVAL MQLCMDKTHC
101: YVMHIIHSGV PPILKSLLED SSSVKVGVCI DNDARKMFND YDVRVQPLMD LSTVANLKLA GPYKRWSLAA LTEMITCKEL PKPGNIRMGN WEAFVLSKKQ
201: LEYAATDAYI SWYLYEVLRS LPDYTPDIET EVV

Best Arabidopsis Sequence Match ( AT4G13870.2 )
(BLAST)

001: MSSSNWIDDA FTEEELLAID AIEASYNFSR SSSSSSSAAP TVQATTSVHG HEEDPNQIPN NIRRQLPRSI TSSTSYKRFP LSRCRARNFP AMRFGGRILY
101: SKTATEVDKR AMQLIKVLDT KRDESGIAFV GLDIEWRPSF RKGVLPGKVA TVQICVDSNY CDVMHIFHSG IPQSLQHLIE DSTLVKVGIG IDGDSVKLFH
201: DYGVSIKDVE DLSDLANQKI GGDKKWGLAS LTETLVCKEL LKPNRIRLGN WEFYPLSKQQ LQYAATDAYA SWHLYKVLKD LPDAVSGS

Arabidopsis Description

WEXWerner Syndrome-like exonuclease [Source:UniProtKB/Swiss-Prot;Acc:Q84LH3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.