Factsheet for Solyc09g092340.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400053073	Potato	nucleus	92.33	92.03
KRH31568	Soybean	mitochondrion	34.33	50.74
HORVU2Hr1G001690.1	Barley	plastid	39.33	50.64
KRG97350	Soybean	nucleus	48.67	50.0
CDY01171	Canola	nucleus	43.67	47.64
Bra032748.1-P	Field mustard	nucleus	43.67	47.29
CDY50420	Canola	nucleus	43.33	47.27
VIT_05s0029g00410.t01	Wine grape	nucleus	45.67	45.51
TraesCS2B01G010000.1	Wheat	nucleus	44.33	45.08
TraesCS2A01G011600.1	Wheat	nucleus	44.33	44.93
Zm00001d004468_P003	Maize	nucleus	45.33	44.88
Os04t0129200-00	Rice	nucleus	44.33	44.63
TraesCS2D01G012000.1	Wheat	nucleus	44.33	44.63
AT4G13870.2	Thale cress	nucleus	42.0	43.75
EES11779	Sorghum	nucleus	44.33	42.77
GSMUA_AchrUn_...	Banana	nucleus	38.0	39.72
Solyc01g100670.1.1	Tomato	cytosol	16.0	29.27
Solyc01g100680.1.1	Tomato	plastid	19.0	28.22
Solyc12g042390.1.1	Tomato	cytosol	20.0	27.65
Solyc10g078200.1.1	Tomato	nucleus	18.0	26.34
Solyc01g103460.2.1	Tomato	cytosol	18.0	25.35
Solyc12g094540.1.1	Tomato	cytosol	16.33	24.02
AT4G13885.1	Thale cress	nucleus	21.0	23.95
Solyc08g078620.1.1	Tomato	mitochondrion	16.0	23.19
Solyc08g007350.1.1	Tomato	cytosol	18.0	22.98
Solyc11g006480.1.1	Tomato	nucleus	13.33	22.6
Solyc04g076930.1.1	Tomato	cytosol, nucleus, plastid	9.67	22.31

Protein Annotations

InterPro:3'-5'_exonuclease_dom	Gene3D:3.30.420.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824
GO:GO:0004518	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008408
GO:GO:0009987	GO:GO:0016787	GO:GO:0090305	InterPro:IPR036397	UniProt:K4CWR0	PFAM:PF01612
PANTHER:PTHR13620	PANTHER:PTHR13620:SF19	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	SMART:SM00474	SUPFAM:SSF53098
EnsemblPlantsGene:Solyc09g092340.2	EnsemblPlants:Solyc09g092340.2.1	UniParc:UPI000276BB84	SEG:seg	:	:

Description

No Description!

Coordinates

chr9:-:71472818..71476840

Molecular Weight (calculated)

33764.0 Da

IEP (calculated)

7.457

GRAVY (calculated)

-0.510

Length

300 amino acids

Sequence
(BLAST)

001: MGTPISGELD DWDRPFTEEE LQEIDAAFES ATKRKSDSVV AAGEESRRKS RRKLPASLFV YHQQNEVSDS SLLSPCTRNQ SRCSYSSRSS NQAAKIVMQY
101: PEMSFKGRVI YSRTINEVEK SAVELLNFVE EKKRKEGNVA LGFDIEWKPT FRRGVPPGKA AVMQICGDKG NCYVLHIIHS GIPQTLQSLL EDPTVVKVGV
201: CIANDAFKVR QDHNVSVKAL EDLSELANKK LDDPKKWSLA SLTEKLLAKQ LPKPSNIRLG NWEANVLSRD QLHYAATDAF VSWYLYQALQ SLPEIVDNKE

Best Arabidopsis Sequence Match ( AT4G13870.2 )
(BLAST)

001: MSSSNWIDDA FTEEELLAID AIEASYNFSR SSSSSSSAAP TVQATTSVHG HEEDPNQIPN NIRRQLPRSI TSSTSYKRFP LSRCRARNFP AMRFGGRILY
101: SKTATEVDKR AMQLIKVLDT KRDESGIAFV GLDIEWRPSF RKGVLPGKVA TVQICVDSNY CDVMHIFHSG IPQSLQHLIE DSTLVKVGIG IDGDSVKLFH
201: DYGVSIKDVE DLSDLANQKI GGDKKWGLAS LTETLVCKEL LKPNRIRLGN WEFYPLSKQQ LQYAATDAYA SWHLYKVLKD LPDAVSGS

Arabidopsis Description

WEXWerner Syndrome-like exonuclease [Source:UniProtKB/Swiss-Prot;Acc:Q84LH3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.