Factsheet for Solyc08g007350.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400032474	Potato	cytosol, nucleus, vacuole	84.26	84.98
PGSC0003DMT400036459	Potato	extracellular	75.32	81.94
PGSC0003DMT400032554	Potato	cytosol	83.83	78.17
Solyc08g078620.1.1	Tomato	mitochondrion	48.51	55.07
EES03385	Sorghum	cytosol, nucleus, plastid	40.43	47.26
Zm00001d043985_P001	Maize	cytosol, nucleus, plastid	40.0	47.0
TraesCS3B01G268100.1	Wheat	cytosol, nucleus, plastid	38.72	46.19
TraesCS3D01G239900.1	Wheat	cytosol, nucleus, plastid	38.72	46.19
TraesCS3A01G239600.1	Wheat	cytosol	38.72	46.19
Zm00001d011507_P001	Maize	cytosol	39.57	46.04
TraesCS3A01G278600.1	Wheat	cytosol	36.6	44.79
TraesCS5A01G007100.1	Wheat	cytosol	38.3	44.78
EES03384	Sorghum	nucleus	38.3	44.55
TraesCS4A01G026000.1	Wheat	cytosol	36.17	44.5
Solyc10g078200.1.1	Tomato	nucleus	38.72	44.39
HORVU7Hr1G071770.1	Barley	cytosol	40.0	44.34
Os01t0660800-01	Rice	nucleus	37.45	44.22
TraesCS7A01G302600.1	Wheat	cytosol	38.72	43.54
TraesCS3B01G312800.1	Wheat	nucleus	38.3	43.27
TraesCS3D01G278900.1	Wheat	nucleus	38.3	43.27
TraesCS7B01G202700.1	Wheat	cytosol	38.3	43.27
Os01t0737600-00	Rice	cytosol	37.87	42.79
EES01441	Sorghum	cytosol, nucleus, plastid	37.87	42.38
TraesCS7D01G297900.1	Wheat	cytosol	33.62	42.25
EES01442	Sorghum	nucleus	37.02	41.83
Solyc12g042390.1.1	Tomato	cytosol	37.87	41.01
Os04t0225100-01	Rice	cytosol	36.17	40.28
Solyc11g006480.1.1	Tomato	nucleus	30.21	40.11
TraesCS3A01G239500.1	Wheat	nucleus	34.04	40.0
EES01443	Sorghum	cytosol	34.47	39.9
HORVU3Hr1G069990.1	Barley	nucleus	38.72	39.74
Solyc01g100670.1.1	Tomato	cytosol	27.66	39.63
TraesCS3D01G239800.1	Wheat	nucleus	33.62	39.5
TraesCS2B01G625700.1	Wheat	cytosol	39.15	39.48
TraesCS2A01G565200.1	Wheat	cytosol	38.72	39.22
Zm00001d043554_P001	Maize	cytosol	33.62	38.73
Solyc12g094540.1.1	Tomato	cytosol	33.62	38.73
HORVU0Hr1G006750.1	Barley	nucleus	33.19	38.61
TraesCS6B01G430200.1	Wheat	cytosol	32.77	38.5
KXG33324	Sorghum	cytosol	31.91	38.07
TraesCS6A01G390200.1	Wheat	nucleus	31.91	37.88
GSMUA_Achr1P12990_001	Banana	plastid	30.21	37.37
OQU87276	Sorghum	nucleus	35.74	37.17
Solyc01g103460.2.1	Tomato	cytosol	33.19	36.62
Os11t0222320-00	Rice	cytosol, nucleus	20.85	36.3
Solyc01g100680.1.1	Tomato	plastid	30.64	35.64
Os01t0737700-00	Rice	nucleus	35.32	35.47
TraesCS3D01G239600.1	Wheat	cytosol	35.32	35.17
Solyc04g076930.1.1	Tomato	cytosol, nucleus, plastid	19.15	34.62
TraesCS3B01G267900.1	Wheat	cytosol	35.32	33.74
EES03381	Sorghum	nucleus	31.49	32.74
Zm00001d047288_P001	Maize	nucleus	21.28	24.75
Zm00001d036734_P001	Maize	nucleus	26.38	23.05
Os01t0660500-00	Rice	mitochondrion	36.17	21.74
Zm00001d011513_P001	Maize	plastid	34.89	18.81
Solyc09g092340.2.1	Tomato	nucleus	22.98	18.0
Zm00001d022094_P001	Maize	nucleus	25.11	13.98
Zm00001d010107_P001	Maize	nucleus	26.38	6.03

Protein Annotations

InterPro:3'-5'_exonuclease_dom	Gene3D:3.30.420.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824
GO:GO:0004518	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008408	GO:GO:0009987
GO:GO:0016787	GO:GO:0090305	InterPro:IPR036397	UniProt:K4CIM2	PFAM:PF01612	PANTHER:PTHR13620
PANTHER:PTHR13620:SF34	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	SMART:SM00474	SUPFAM:SSF53098	EnsemblPlantsGene:Solyc08g007350.1
EnsemblPlants:Solyc08g007350.1.1	UniParc:UPI000276C62C	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr8:-:1917705..1918412

Molecular Weight (calculated)

27171.2 Da

IEP (calculated)

7.009

GRAVY (calculated)

-0.066

Length

235 amino acids

Sequence
(BLAST)

001: MAKTYGIEFY GDEIQVTVSK NAVVVNDWIL ETVHLHRRRH HKLVVGLDIE WLPCFNPDEN HPVALLQLCV GRRCLLFQLL HRDGVPAYLA EFLVDSNVKF
101: VGVGVEGDAE KLLRDHKLFV LNTVDLNRLA LSVYGEEVYG KMGLKRMAKE VLGKVMEKPK NVTLSKWDAE ELVYEQVEYA AIDAFMSFEI GKNLLNLVWK
201: RERERQYLNC HYQPPPLLLL QHTRGMFQTF ALFSV

Best Arabidopsis Sequence Match ( AT3G12410.1 )
(BLAST)

001: MASPTIRTVA SYNTHLEYSV DFFGDEFIVT VTWDSSVISR WIRNVLFNNR FSSHPLVVGV GVQWTPFSYY SDPRPNNYYA DPPPIRYYSD NPADILQLCV
101: GNRCLIIQLG YCDQVPNNLR SFLADPETTF VGVWNGQDAG KLARCCHQLE IGELLDIRRY VTDSWGRSMR RSSFEEIVEE CMGYQGVMLD PEISMSDWTA
201: YDLDLDQILQ ASLDAYVCHQ LGVWTRLWEV

Arabidopsis Description

Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LHG7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.