Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G278900.1 | Wheat | nucleus | 96.88 | 89.42 |
| TraesCS3B01G312800.1 | Wheat | nucleus | 96.35 | 88.94 |
| HORVU3Hr1G069990.1 | Barley | nucleus | 91.15 | 76.42 |
| Os01t0737600-00 | Rice | cytosol | 70.31 | 64.9 |
| EES01442 | Sorghum | nucleus | 69.27 | 63.94 |
| KXG33324 | Sorghum | cytosol | 59.38 | 57.87 |
| Os01t0737700-00 | Rice | nucleus | 67.71 | 55.56 |
| TraesCS3A01G239600.1 | Wheat | cytosol | 51.04 | 49.75 |
| TraesCS5A01G007100.1 | Wheat | cytosol | 51.04 | 48.76 |
| TraesCS7A01G302600.1 | Wheat | cytosol | 52.6 | 48.33 |
| TraesCS4A01G026000.1 | Wheat | cytosol | 47.92 | 48.17 |
| PGSC0003DMT400093830 | Potato | cytosol | 47.92 | 44.88 |
| Solyc10g078200.1.1 | Tomato | nucleus | 46.88 | 43.9 |
| VIT_08s0040g00710.t01 | Wine grape | cytosol | 47.4 | 43.75 |
| TraesCS3A01G239500.1 | Wheat | nucleus | 44.79 | 43.0 |
| TraesCS2A01G565200.1 | Wheat | cytosol | 51.56 | 42.67 |
| TraesCS6A01G390200.1 | Wheat | nucleus | 41.15 | 39.9 |
| Solyc08g078620.1.1 | Tomato | mitochondrion | 42.71 | 39.61 |
| KRH00115 | Soybean | nucleus | 43.75 | 39.44 |
| KRH00114 | Soybean | cytosol | 45.31 | 38.5 |
| KRH49255 | Soybean | nucleus | 46.88 | 37.82 |
| KRH49260 | Soybean | cytosol, nucleus, peroxisome | 41.15 | 37.26 |
| Solyc01g103460.2.1 | Tomato | cytosol | 40.62 | 36.62 |
| Solyc08g007350.1.1 | Tomato | cytosol | 44.79 | 36.6 |
| Solyc12g042390.1.1 | Tomato | cytosol | 41.15 | 36.41 |
| KRH00116 | Soybean | cytosol | 39.58 | 36.02 |
| GSMUA_Achr1P12990_001 | Banana | plastid | 35.42 | 35.79 |
| PGSC0003DMT400036459 | Potato | extracellular | 40.1 | 35.65 |
| PGSC0003DMT400064032 | Potato | nucleus | 39.58 | 35.35 |
| PGSC0003DMT400032474 | Potato | cytosol, nucleus, vacuole | 42.71 | 35.19 |
| Solyc11g006480.1.1 | Tomato | nucleus | 32.29 | 35.03 |
| PGSC0003DMT400094103 | Potato | mitochondrion | 38.54 | 34.74 |
| PGSC0003DMT400075613 | Potato | nucleus | 39.58 | 34.55 |
| TraesCS3A01G116100.1 | Wheat | mitochondrion, nucleus, plastid | 35.42 | 33.83 |
| Solyc12g094540.1.1 | Tomato | cytosol | 35.94 | 33.82 |
| PGSC0003DMT400032554 | Potato | cytosol | 43.75 | 33.33 |
| TraesCS1A01G315700.1 | Wheat | mitochondrion | 33.85 | 32.66 |
| KRH00112 | Soybean | nucleus | 30.21 | 29.0 |
| TraesCS2A01G011600.1 | Wheat | nucleus | 25.0 | 16.22 |
| TraesCS2A01G262300.1 | Wheat | cytosol, mitochondrion, nucleus | 36.46 | 11.95 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G278600.1 | EnsemblPlantsGene:TraesCS3A01G278600 | Gene3D:3.30.420.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR036397 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | PANTHER:PTHR13620 | PANTHER:PTHR13620:SF34 | SEG:seg |
| SUPFAM:SSF53098 | TIGR:cd06141 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr3A:-:508173692..508174270
Molecular Weight (calculated)
21590.9 Da
IEP (calculated)
6.621
GRAVY (calculated)
0.000
Length
192 amino acids
Sequence
(BLAST)
(BLAST)
001: MATSMVTDFG DGHCIVAFGQ DHVHTTLTSS GGVVDEWLDL VYRIHRRRLD RLVVGLDVEW RPSFRGLPPG PVALLQLCVG RRCLVFQILR ADYVPDSLFD
101: FLADGRFTFV GVGVYGDAQK LSAHYGLQVT NAVDLRYLAA NMQVMGVWPE KPHHVRVSAW DAPRLTRDQL QYACADAFAS FEVGRRLYDG EY
101: FLADGRFTFV GVGVYGDAQK LSAHYGLQVT NAVDLRYLAA NMQVMGVWPE KPHHVRVSAW DAPRLTRDQL QYACADAFAS FEVGRRLYDG EY
001: MSSSIVKIGI DSIKTTVTEK ERDINRLVKT FLSNKNNRKK IIGLDTERVQ KGRKLNKTVL LQLCDGDNCL IVQLPDEDED EGEGEDDNLP LPLFNFLNLP
101: EFTFVGIGIN KTMMRLESEF GLTCKNVVEI GPATWNLTNM TTDVKFRISA IVSTERPSNA VLEDWEKFVL NKNQIKLAAS NAYFAFGIGN ILLDVQILS
101: EFTFVGIGIN KTMMRLESEF GLTCKNVVEI GPATWNLTNM TTDVKFRISA IVSTERPSNA VLEDWEKFVL NKNQIKLAAS NAYFAFGIGN ILLDVQILS
Arabidopsis Description
Emb [Source:UniProtKB/TrEMBL;Acc:Q9LK79]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.