CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 4
peroxisome 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH00115	Soybean	nucleus	66.98	66.67
KRH00116	Soybean	cytosol	58.49	58.77
KRH00114	Soybean	cytosol	54.25	50.88
PGSC0003DMT400094103	Potato	mitochondrion	47.64	47.42
Zm00001d011507_P001	Maize	cytosol	44.81	47.03
KRH49255	Soybean	nucleus	52.36	46.64
VIT_08s0040g00710.t01	Wine grape	cytosol	45.75	46.63
PGSC0003DMT400064032	Potato	nucleus	47.17	46.51
TraesCS3A01G239600.1	Wheat	cytosol	42.45	45.69
TraesCS3B01G268100.1	Wheat	cytosol, nucleus, plastid	42.45	45.69
EES03384	Sorghum	nucleus	43.4	45.54
Solyc01g103460.2.1	Tomato	cytosol	45.75	45.54
Os01t0660800-01	Rice	nucleus	42.45	45.23
TraesCS3D01G239900.1	Wheat	cytosol, nucleus, plastid	41.98	45.18
TraesCS3A01G239500.1	Wheat	nucleus	41.51	44.0
Solyc11g006480.1.1	Tomato	nucleus	36.32	43.5
TraesCS3D01G239800.1	Wheat	nucleus	41.04	43.5
TraesCS5A01G007100.1	Wheat	cytosol	41.04	43.28
HORVU7Hr1G071770.1	Barley	cytosol	42.92	42.92
TraesCS7B01G202700.1	Wheat	cytosol	41.98	42.79
TraesCS7A01G302600.1	Wheat	cytosol	41.98	42.58
TraesCS4A01G026000.1	Wheat	cytosol	38.21	42.41
Os01t0737600-00	Rice	cytosol	41.04	41.83
Zm00001d043985_P001	Maize	cytosol, nucleus, plastid	39.15	41.5
EES01443	Sorghum	cytosol	39.62	41.38
EES03385	Sorghum	cytosol, nucleus, plastid	39.15	41.29
Zm00001d043554_P001	Maize	cytosol	39.62	41.18
TraesCS3A01G278600.1	Wheat	cytosol	37.26	41.15
EES01442	Sorghum	nucleus	40.09	40.87
Os04t0225100-01	Rice	cytosol	40.57	40.76
TraesCS6B01G430200.1	Wheat	cytosol	37.74	40.0
TraesCS3D01G278900.1	Wheat	nucleus	39.15	39.9
TraesCS3B01G312800.1	Wheat	nucleus	39.15	39.9
TraesCS7D01G297900.1	Wheat	cytosol	34.91	39.57
EES01441	Sorghum	cytosol, nucleus, plastid	39.15	39.52
TraesCS6A01G390200.1	Wheat	nucleus	35.85	38.38
OQU87276	Sorghum	nucleus	40.57	38.05
HORVU0Hr1G006750.1	Barley	nucleus	35.85	37.62
TraesCS2A01G565200.1	Wheat	cytosol	41.04	37.5
EES03381	Sorghum	nucleus	38.68	36.28
TraesCS2B01G625700.1	Wheat	cytosol	39.62	36.05
Os01t0737700-00	Rice	nucleus	39.62	35.9
HORVU3Hr1G069990.1	Barley	nucleus	38.68	35.81
KXG33324	Sorghum	cytosol	33.02	35.53
GSMUA_Achr1P12990_001	Banana	plastid	31.6	35.26
KRH00112	Soybean	nucleus	33.02	35.0
KRH36952	Soybean	cytosol	33.49	34.47
TraesCS3D01G239600.1	Wheat	cytosol	35.85	32.2
Os11t0222320-00	Rice	cytosol, nucleus	20.28	31.85
KRH26003	Soybean	nucleus	31.13	31.73
TraesCS3B01G267900.1	Wheat	cytosol	36.79	31.71
KRH63674	Soybean	cytosol	23.11	29.7
KRH11911	Soybean	nucleus	31.13	28.95
KRH31568	Soybean	mitochondrion	22.17	23.15
Os01t0660500-00	Rice	mitochondrion	39.62	21.48
Zm00001d047288_P001	Maize	nucleus	20.28	21.29
KRG97350	Soybean	nucleus	27.36	19.86
Zm00001d011513_P001	Maize	plastid	39.62	19.27
Zm00001d036734_P001	Maize	nucleus	23.58	18.59
Zm00001d022094_P001	Maize	nucleus	30.19	15.17
Zm00001d010107_P001	Maize	nucleus	30.66	6.32

Protein Annotations

EntrezGene:100794147	InterPro:3'-5'_exonuclease_dom	Gene3D:3.30.420.10	MapMan:35.1	EMBL:ACUP02004349	EnsemblPlantsGene:GLYMA_07G143700
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004518	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0008408	GO:GO:0009987	GO:GO:0016787	GO:GO:0090305	UniProt:I1KK93
InterPro:IPR036397	EnsemblPlants:KRH49260	ProteinID:KRH49260	ProteinID:KRH49260.1	PFAM:PF01612	PANTHER:PTHR13620
PANTHER:PTHR13620:SF34	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	SUPFAM:SSF53098	UniParc:UPI0001CAC033	:

Description

hypothetical protein

Coordinates

chr7:-:17110988..17111984

Molecular Weight (calculated)

23591.2 Da

IEP (calculated)

4.317

GRAVY (calculated)

-0.028

Length

212 amino acids

Sequence
(BLAST)

001: MITTAILIEE NGTGTNNYKR YEVTMGNYTI QTLVTASPSQ VGSWLSSNIR NNADDLMIVG LDVEWKPNTR PNMQPPNPVA TLQLCIGHNC LIFQILYAPL
101: IPRALSSFLN NPDVIFVGVG IQEDADKLLR DYNLRVTNVG ELRSLAAEEL QVFQLQWAGL AALGHYVLGF EIDKPENVTM SRWDNRYLTD EQVAYAAIDA
201: FVSGEIGRAL ID

Best Arabidopsis Sequence Match ( AT2G36110.1 )
(BLAST)

001: MARIRRRIQK RHIHENRYID FFGERLIVTV THTTSTIRRW IHSIRFFSRL RSSHPLVVGL DVQWTPGGSD PPPDILQLCV GNRCLIIQLS HCKRIPEVLR
101: SFLEDETITF VGVWNSQDQG KLERFRHQLE IWRLLDIRHY LPTRLLNSSF EKIVEECLGY KGVRKDKEIC MSNWGARSLS HDQIVQASDD VYVCCKLGVK
201: ECIWKERSNV KERIWKESSN VKEHIWKESS KLYFVGVCF

Arabidopsis Description

Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SIH3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.