Factsheet for TraesCS6B01G430200.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G390200.1	Wheat	nucleus	81.0	81.82
TraesCS7B01G202700.1	Wheat	cytosol	50.0	48.08
TraesCS3B01G268100.1	Wheat	cytosol, nucleus, plastid	45.5	46.19
TraesCS3B01G267900.1	Wheat	cytosol	52.0	42.28
Solyc10g078200.1.1	Tomato	nucleus	43.0	41.95
TraesCS3B01G312800.1	Wheat	nucleus	43.5	41.83
TraesCS2B01G625700.1	Wheat	cytosol	48.0	41.2
PGSC0003DMT400094103	Potato	mitochondrion	43.5	40.85
PGSC0003DMT400093830	Potato	cytosol	41.5	40.49
Solyc01g103460.2.1	Tomato	cytosol	43.0	40.38
VIT_08s0040g00710.t01	Wine grape	cytosol	41.5	39.9
PGSC0003DMT400064032	Potato	nucleus	42.5	39.53
Solyc12g042390.1.1	Tomato	cytosol	42.0	38.71
KRH00115	Soybean	nucleus	41.0	38.5
Solyc11g006480.1.1	Tomato	nucleus	33.5	37.85
KRH49260	Soybean	cytosol, nucleus, peroxisome	40.0	37.74
Solyc08g078620.1.1	Tomato	mitochondrion	39.0	37.68
PGSC0003DMT400075613	Potato	nucleus	40.5	36.82
KRH00116	Soybean	cytosol	38.5	36.49
Solyc12g094540.1.1	Tomato	cytosol	37.0	36.27
KRH49255	Soybean	nucleus	43.0	36.13
KRH00114	Soybean	cytosol	40.5	35.84
PGSC0003DMT400032474	Potato	cytosol, nucleus, vacuole	40.0	34.33
TraesCS3B01G135200.1	Wheat	nucleus, peroxisome, plastid	34.0	34.0
Solyc08g007350.1.1	Tomato	cytosol	38.5	32.77
PGSC0003DMT400036459	Potato	extracellular	35.0	32.41
GSMUA_Achr1P12990_001	Banana	plastid	30.5	32.11
KRH00112	Soybean	nucleus	31.5	31.5
PGSC0003DMT400032554	Potato	cytosol	37.0	29.37
TraesCS1B01G327900.1	Wheat	mitochondrion	24.5	24.62
TraesCS2B01G010000.1	Wheat	nucleus	25.0	16.95
TraesCS2B01G279800.1	Wheat	mitochondrion, plastid	0.0	0.0

Protein Annotations

InterPro:3'-5'_exonuclease_dom	Gene3D:3.30.420.10	MapMan:35.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824
GO:GO:0004518	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008408
GO:GO:0009987	GO:GO:0016787	InterPro:IPR036397	PFAM:PF01612	PANTHER:PTHR13620	PANTHER:PTHR13620:SF32
InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	SMART:SM00474	SUPFAM:SSF53098	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS6B01G430200
EnsemblPlants:TraesCS6B01G430200.1	TIGR:cd06141	:	:	:	:

Description

No Description!

Coordinates

chr6B:+:697949645..697950247

Molecular Weight (calculated)

22380.0 Da

IEP (calculated)

8.616

GRAVY (calculated)

-0.167

Length

200 amino acids

Sequence
(BLAST)

001: MAERYNTDVI MDDGTIIHTT VTSWSLDVQR FIKEVQGSQI RITGLDAEWR PNRKRGAGQN PIAVLQLCVG RRCLVYQIIH GTGIPISLCS FLYLSGFTFV
101: GVGIADDAKR LRAEYSLEVS NMVDLRELAA NSPHRPRPEL RSAGLKARAL AVMGAHIPKP PEVTMSDWTA PSQSREQVEY ACIDAYVSFE IGRRLLTRNY

Best Arabidopsis Sequence Match ( AT5G48350.1 )
(BLAST)

001: MSSSIVKIGI DSIKTTVTEK ERDINRLVKT FLSNKNNRKK IIGLDTERVQ KGRKLNKTVL LQLCDGDNCL IVQLPDEDED EGEGEDDNLP LPLFNFLNLP
101: EFTFVGIGIN KTMMRLESEF GLTCKNVVEI GPATWNLTNM TTDVKFRISA IVSTERPSNA VLEDWEKFVL NKNQIKLAAS NAYFAFGIGN ILLDVQILS

Arabidopsis Description

Emb [Source:UniProtKB/TrEMBL;Acc:Q9LK79]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.