Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g103460.2.1 | Tomato | cytosol | 86.98 | 87.79 |
| PGSC0003DMT400094103 | Potato | mitochondrion | 63.72 | 64.32 |
| VIT_08s0040g00710.t01 | Wine grape | cytosol | 49.77 | 51.44 |
| PGSC0003DMT400093830 | Potato | cytosol | 47.91 | 50.24 |
| KRH49260 | Soybean | cytosol, nucleus, peroxisome | 46.51 | 47.17 |
| KRH00116 | Soybean | cytosol | 45.12 | 45.97 |
| PGSC0003DMT400075613 | Potato | nucleus | 46.51 | 45.45 |
| Zm00001d043985_P001 | Maize | cytosol, nucleus, plastid | 41.86 | 45.0 |
| HORVU7Hr1G071770.1 | Barley | cytosol | 44.19 | 44.81 |
| Zm00001d011507_P001 | Maize | cytosol | 41.4 | 44.06 |
| TraesCS7A01G302600.1 | Wheat | cytosol | 42.79 | 44.02 |
| TraesCS5A01G007100.1 | Wheat | cytosol | 40.93 | 43.78 |
| TraesCS7B01G202700.1 | Wheat | cytosol | 41.86 | 43.27 |
| TraesCS3A01G239600.1 | Wheat | cytosol | 39.53 | 43.15 |
| TraesCS3D01G239900.1 | Wheat | cytosol, nucleus, plastid | 39.53 | 43.15 |
| EES03385 | Sorghum | cytosol, nucleus, plastid | 40.0 | 42.79 |
| Os01t0660800-01 | Rice | nucleus | 39.53 | 42.71 |
| TraesCS3B01G268100.1 | Wheat | cytosol, nucleus, plastid | 39.07 | 42.64 |
| TraesCS6B01G430200.1 | Wheat | cytosol | 39.53 | 42.5 |
| KRH00115 | Soybean | nucleus | 41.4 | 41.78 |
| KRH49255 | Soybean | nucleus | 46.05 | 41.6 |
| TraesCS4A01G026000.1 | Wheat | cytosol | 36.74 | 41.36 |
| TraesCS7D01G297900.1 | Wheat | cytosol | 35.81 | 41.18 |
| EES03384 | Sorghum | nucleus | 38.6 | 41.09 |
| TraesCS2A01G565200.1 | Wheat | cytosol | 44.19 | 40.95 |
| Os01t0737600-00 | Rice | cytosol | 39.07 | 40.38 |
| KRH00114 | Soybean | cytosol | 42.33 | 40.27 |
| TraesCS3A01G239500.1 | Wheat | nucleus | 37.21 | 40.0 |
| TraesCS3D01G278900.1 | Wheat | nucleus | 38.6 | 39.9 |
| TraesCS3B01G312800.1 | Wheat | nucleus | 38.6 | 39.9 |
| EES01442 | Sorghum | nucleus | 38.6 | 39.9 |
| TraesCS3A01G278600.1 | Wheat | cytosol | 35.35 | 39.58 |
| TraesCS6A01G390200.1 | Wheat | nucleus | 36.28 | 39.39 |
| Zm00001d043554_P001 | Maize | cytosol | 37.21 | 39.22 |
| TraesCS3D01G239800.1 | Wheat | nucleus | 36.28 | 39.0 |
| TraesCS2B01G625700.1 | Wheat | cytosol | 41.86 | 38.63 |
| PGSC0003DMT400087534 | Potato | cytosol, nucleus, plastid | 28.37 | 38.61 |
| EES01441 | Sorghum | cytosol, nucleus, plastid | 37.67 | 38.57 |
| EES01443 | Sorghum | cytosol | 36.28 | 38.42 |
| Os04t0225100-01 | Rice | cytosol | 37.21 | 37.91 |
| OQU87276 | Sorghum | nucleus | 38.6 | 36.73 |
| Os01t0737700-00 | Rice | nucleus | 39.53 | 36.32 |
| EES03381 | Sorghum | nucleus | 37.67 | 35.84 |
| KXG33324 | Sorghum | cytosol | 32.56 | 35.53 |
| PGSC0003DMT400092627 | Potato | nucleus | 33.95 | 35.44 |
| PGSC0003DMT400016348 | Potato | nucleus | 34.42 | 35.41 |
| HORVU3Hr1G069990.1 | Barley | nucleus | 37.67 | 35.37 |
| GSMUA_Achr1P12990_001 | Banana | plastid | 31.16 | 35.26 |
| PGSC0003DMT400032474 | Potato | cytosol, nucleus, vacuole | 37.67 | 34.76 |
| HORVU0Hr1G006750.1 | Barley | nucleus | 32.56 | 34.65 |
| TraesCS3D01G239600.1 | Wheat | cytosol | 37.21 | 33.9 |
| PGSC0003DMT400036459 | Potato | extracellular | 33.95 | 33.8 |
| KRH00112 | Soybean | nucleus | 30.7 | 33.0 |
| PGSC0003DMT400032554 | Potato | cytosol | 38.14 | 32.54 |
| TraesCS3B01G267900.1 | Wheat | cytosol | 37.21 | 32.52 |
| Os11t0222320-00 | Rice | cytosol, nucleus | 19.07 | 30.37 |
| Zm00001d047288_P001 | Maize | nucleus | 22.33 | 23.76 |
| Zm00001d036734_P001 | Maize | nucleus | 24.65 | 19.7 |
| Os01t0660500-00 | Rice | mitochondrion | 35.81 | 19.69 |
| Zm00001d011513_P001 | Maize | plastid | 37.67 | 18.58 |
| PGSC0003DMT400053073 | Potato | nucleus | 25.12 | 17.94 |
| Zm00001d022094_P001 | Maize | nucleus | 30.7 | 15.64 |
| Zm00001d010107_P001 | Maize | nucleus | 29.77 | 6.22 |
Protein Annotations
| EntrezGene:102588582 | InterPro:3'-5'_exonuclease_dom | Gene3D:3.30.420.10 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003824 | GO:GO:0004518 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008408 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0090305 | InterPro:IPR036397 | UniProt:M1CBM1 |
| PFAM:PF01612 | EnsemblPlantsGene:PGSC0003DMG400024888 | PGSC:PGSC0003DMG400024888 | EnsemblPlants:PGSC0003DMT400064032 | PANTHER:PTHR13620 | PANTHER:PTHR13620:SF34 |
| InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | SMART:SM00474 | SUPFAM:SSF53098 | UniParc:UPI000296133F | RefSeq:XP_006349320.1 |
| SEG:seg | : | : | : | : | : |
Description
3-5 exonuclease [Source:PGSC_GENE;Acc:PGSC0003DMG400024888]
Coordinates
chr1:+:80166291..80167243
Molecular Weight (calculated)
24922.6 Da
IEP (calculated)
4.870
GRAVY (calculated)
-0.301
Length
215 amino acids
Sequence
(BLAST)
(BLAST)
001: MDVQLIEYEL ACNCNYRLYN VILDEDDTEI ETSVTVDPST VSSWIKKIET ENGSRLHRLI VGLDIEWRPN FNPVADRNPV ATIQLCVGES CIIYQVLHSN
101: HIPRRLRNFL NNDDYRFVGV GIRSDVDKLW EDYDLEVSNV VDLREWAAEE LNKKKLLNSG LKYLGKKIAG IEIEKPKSVT TSAWDQRWLS RKQICYACID
201: AYISFEVGRV LSAWY
101: HIPRRLRNFL NNDDYRFVGV GIRSDVDKLW EDYDLEVSNV VDLREWAAEE LNKKKLLNSG LKYLGKKIAG IEIEKPKSVT TSAWDQRWLS RKQICYACID
201: AYISFEVGRV LSAWY
001: MAPTIRTIGS YATQQRYSVD FFGEELFVTV TPDPSVIGQW IHDVFFHNRL SSHPLVVGVG VQWTPSGYHP ASPPVSYRSD SSPDSYRSDS PPVFYSSDPP
101: ADTLQLCVGN RCIIIQLRYC ERVPQVLRNF LADRDNTFVG IWNSQDAGKL ERSRHQLEIA ELMDLREFVS DSSGRRSMYN YSLEKIVEEN LGYPGVRLDR
201: EVSMSDWRVY NLSYDQILQA SIDVYACCSL AILDHLWEEK NR
101: ADTLQLCVGN RCIIIQLRYC ERVPQVLRNF LADRDNTFVG IWNSQDAGKL ERSRHQLEIA ELMDLREFVS DSSGRRSMYN YSLEKIVEEN LGYPGVRLDR
201: EVSMSDWRVY NLSYDQILQA SIDVYACCSL AILDHLWEEK NR
Arabidopsis Description
Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LHG2]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.