Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- plastid 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400092627 | Potato | nucleus | 92.41 | 70.87 |
| Solyc01g100680.1.1 | Tomato | plastid | 84.81 | 66.34 |
| PGSC0003DMT400016348 | Potato | nucleus | 68.35 | 51.67 |
| KRH26003 | Soybean | nucleus | 51.9 | 39.42 |
| TraesCS3D01G118000.1 | Wheat | nucleus, peroxisome, plastid | 46.2 | 36.5 |
| TraesCS3B01G135200.1 | Wheat | nucleus, peroxisome, plastid | 46.2 | 36.5 |
| Zm00001d009130_P001 | Maize | nucleus | 47.47 | 35.05 |
| Os01t0300000-01 | Rice | nucleus | 44.3 | 34.83 |
| TraesCS3A01G116100.1 | Wheat | mitochondrion, nucleus, plastid | 44.3 | 34.83 |
| KRH63674 | Soybean | cytosol | 36.08 | 34.55 |
| HORVU7Hr1G098080.1 | Barley | nucleus | 42.41 | 34.01 |
| HORVU3Hr1G021110.1 | Barley | nucleus | 42.41 | 34.01 |
| KXG32361 | Sorghum | mitochondrion | 46.2 | 33.33 |
| PGSC0003DMT400093830 | Potato | cytosol | 39.87 | 30.73 |
| PGSC0003DMT400094103 | Potato | mitochondrion | 40.51 | 30.05 |
| PGSC0003DMT400036459 | Potato | extracellular | 39.87 | 29.17 |
| PGSC0003DMT400064032 | Potato | nucleus | 38.61 | 28.37 |
| PGSC0003DMT400075613 | Potato | nucleus | 38.61 | 27.73 |
| PGSC0003DMT400032474 | Potato | cytosol, nucleus, vacuole | 40.51 | 27.47 |
| PGSC0003DMT400032554 | Potato | cytosol | 39.24 | 24.6 |
| Os01t0299700-01 | Rice | cytosol, peroxisome | 35.44 | 23.63 |
| PGSC0003DMT400053073 | Potato | nucleus | 28.48 | 14.95 |
Protein Annotations
| InterPro:3'-5'_exonuclease_dom | Gene3D:3.30.420.10 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 |
| GO:GO:0004518 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008408 |
| GO:GO:0009987 | GO:GO:0016787 | GO:GO:0090305 | InterPro:IPR036397 | UniProt:M1DE14 | PFAM:PF01612 |
| EnsemblPlantsGene:PGSC0003DMG400037105 | PGSC:PGSC0003DMG400037105 | EnsemblPlants:PGSC0003DMT400087534 | PANTHER:PTHR13620 | PANTHER:PTHR13620:SF34 | InterPro:RNaseH-like_sf |
| InterPro:RNaseH_sf | SUPFAM:SSF53098 | UniParc:UPI0002950947 | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400037105]
Coordinates
chr1:+:78332896..78333372
Molecular Weight (calculated)
17908.5 Da
IEP (calculated)
7.204
GRAVY (calculated)
-0.217
Length
158 amino acids
Sequence
(BLAST)
(BLAST)
001: MLSKYSGRQT VVGLDNEWKP TFSSYTSNKS ATLQLCIDNT CLIVQLFYLD EIPQTLKNFL ANPNFTFVGV EVGEDILKLK NEYGLVCTSQ VDIRDVAKTK
101: WPGRFSRPGL KDLANEICGI YMPKPKHVCQ SNWEAQVEYA CIDAYASYKI GHKLLIEN
101: WPGRFSRPGL KDLANEICGI YMPKPKHVCQ SNWEAQVEYA CIDAYASYKI GHKLLIEN
001: MSSSIVKIGI DSIKTTVTEK ERDINRLVKT FLSNKNNRKK IIGLDTERVQ KGRKLNKTVL LQLCDGDNCL IVQLPDEDED EGEGEDDNLP LPLFNFLNLP
101: EFTFVGIGIN KTMMRLESEF GLTCKNVVEI GPATWNLTNM TTDVKFRISA IVSTERPSNA VLEDWEKFVL NKNQIKLAAS NAYFAFGIGN ILLDVQILS
101: EFTFVGIGIN KTMMRLESEF GLTCKNVVEI GPATWNLTNM TTDVKFRISA IVSTERPSNA VLEDWEKFVL NKNQIKLAAS NAYFAFGIGN ILLDVQILS
Arabidopsis Description
Emb [Source:UniProtKB/TrEMBL;Acc:Q9LK79]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.